[BioRuby] GFF3

Pjotr Prins pjotr.public14 at thebird.nl
Mon Aug 16 12:05:30 UTC 2010


The GFF3 module parses GFF3 files and stores them in memory. We could
do something with that data. Most people will want to fetch mRNA and
CDS's. BioPerl has some similar facility.

How about adding a module GFF3::Sequence with methods that fetch the
mRNA (splicing) variants and CDS's that belong to an ID? Or do you
think an implementation would be ambiguous?

Or is that already in there? I must admit I can't find it.

Pj.




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