[BioRuby] Bioruby Website Problems

Ben Woodcroft donttrustben at gmail.com
Tue Sep 30 01:55:35 UTC 2008


Hi,

I am having problems using the bioruby.org site. My first problem was that
the fetch function started giving me 404s:

>> pdb = Bio::Fetch.new.fetch('PDB','2A06')
OpenURI::HTTPError: 404 Not Found
    from /usr/lib/ruby/1.8/open-uri.rb:277:in `open_http'
    from /usr/lib/ruby/1.8/open-uri.rb:616:in `buffer_open'
    from /usr/lib/ruby/1.8/open-uri.rb:164:in `open_loop'
    from /usr/lib/ruby/1.8/open-uri.rb:162:in `catch'
    from /usr/lib/ruby/1.8/open-uri.rb:162:in `open_loop'
    from /usr/lib/ruby/1.8/open-uri.rb:132:in `open_uri'
    from /home/ben/forays/bioruby_wwood/lib/bio/command.rb:223:in `read_uri'
    from /home/ben/forays/bioruby_wwood/lib/bio/io/fetch.rb:109:in `fetch'
    from (irb):13

Went to bioruby.org/rdoc in firefox and that also fails. bioruby.org itself
redirects to the Human Genome Center (Tokyo Uni) front page.

Thanks,
ben

-- 
FYI: My email addresses at unimelb, uq and gmail all redirect to the same
place.



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