[BioRuby] Multi Fasta Sequence file to Genbank conversion..

Adam Kraut adamnkraut at gmail.com
Thu Sep 4 23:13:25 UTC 2008

I've never used the genbank format, but in Bioruby you could try:

include Bio

fasta = Alignment::MultiFastaFormat.new(File.open('my.fasta').read)
fasta.entries.each do |seq|
  puts seq.to_seq.output(:genbank)

The only tricky part is perhaps is the to_seq call for a Bio::Sequence
object which has different output format methods.

On Thu, Sep 4, 2008 at 10:53 AM, Sharvari Gujja <sgujja at broad.mit.edu>wrote:

> Hi,
> I am trying to convert a multi fasta sequence file (nucleotide/protein) to
> genbank format.Is there a way to do this using Bioruby?
> Appreciate any input/suggestions.
> Thanks
> S
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