[BioRuby] How to install EMBOSS suites in my local environment?

[Sharvari Gujja]

Toshiaki Katayama wrote:
> http://www.google.com/
> http://emboss.sourceforge.net/
>
> On 2008/01/10, at 2:15, Sharvari Gujja wrote:
>
>   
>> Hi,
>>
>> I am trying to use Emboss tools in bioruby1.2.1 and would like to know how to install Emboss suite in my local environment
>>
>> Thanks
>> -S
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>> BioRuby at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>     
>
>
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Hi,

when I use the exec command in bioruby1.2.1 , i get the following error:

C:/Program Files/ruby/lib/ruby/site_ruby/1.8/bio/appl/emboss.rb:135:in 
`exec': undefined method `close' for nil:NilClass (NoMethodError)
    from Z:/emboss1.rb:11

obj_A = Bio::EMBOSS.new('transeq -sbegin 110 -send 1171 embl:xlrhodop')
obj_A.exec
puts obj_A.result                   #=> a FASTA-formatted sequence

Really appreciate any input.

Thanks
Sharvari

PS: bioruby version is 1.2.1
ruby version 1.8.6



the script i am running is: