[BioRuby] Bioruby and KEGG

Toshiaki Katayama ktym at hgc.jp
Fri Feb 1 01:10:11 UTC 2008


It depends on what kind of sequences in your multi fasta file, but
I can recommend you to try KAAS with SBH (single best hit) method.


Toshiaki Katayama

On 2008/02/01, at 7:19, Sharvari Gujja wrote:

> Hi,
> I am trying to do KEGG analysis on protein multi fasta file(input file)
> in bioruby to get KO description for all the orfs in the fasta file.
> Appreciate any input on this.
> Thanks
> Sharvari
> PS: Version : BioRuby 1.2.1 / Ruby 1.8.6
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