[BioRuby] Residue contacts

Fredrik Johansson fredjoha at bioreg.kyushu-u.ac.jp
Fri Apr 20 02:47:12 UTC 2007

I have seen from the documentation that BioRuby makes it possible to
check distances between atoms in a Bio::PDB object. My question then
is : is it also possible to do this on the residue level (distance
defined in some way)? 

Ultimately I want to find all residues found within a specified distance
of a specified residue (i.e. which residues are in contact), so if
BioRuby has THAT method I would be very happy.

Thanks for any answer!


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