[BioRuby] Error reading GenBank file
ktym at hgc.jp
Wed Dec 7 04:55:16 EST 2005
On 2005/12/07, at 18:13, Toshiaki Katayama wrote:
> So, it is a problem with Bio::FlatFile module.
Sorry, it was a problem with Bio::GenBank module.
To say more precisely, your file contained 2 entries in logic.
One is a genbank:AJ271885 and the other is empty entry.
>> And that's what I get:
This is a result from the first entry,
>> NoMethodError: undefined method `=' for nil:NilClass
and this is a error caused by the second entry.
What is the best interface for the empty or incomplete entry?
raise an exception? or just returns empty string?
irb> gb = Bio::GenBank.new('')
irb> p gb.naseq
NoMethodError: undefined method `=' for nil:NilClass
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