[BioRuby-cvs] bioruby/doc Tutorial.rd,1.21,1.22

[Pjotr Prins]

Update of /home/repository/bioruby/bioruby/doc
In directory dev.open-bio.org:/tmp/cvs-serv829/doc

Modified Files:
	Tutorial.rd 
Log Message:
Piping FASTA files (examples and doc)

Index: Tutorial.rd
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/Tutorial.rd,v
retrieving revision 1.21
retrieving revision 1.22
diff -C2 -d -r1.21 -r1.22
*** Tutorial.rd	13 Feb 2008 08:04:30 -0000	1.21
--- Tutorial.rd	19 May 2008 12:22:05 -0000	1.22
***************
*** 466,470 ****
  
  An example that can take any input, filter using a regular expression to output
! to a FASTA file can be found in sample/any2fasta.rb.
  
  Other methods to extract specific data from database objects can be
--- 466,477 ----
  
  An example that can take any input, filter using a regular expression to output
! to a FASTA file can be found in sample/any2fasta.rb. With this technique it is
! possible to write a Unix type grep/sort pipe for sequence information. One
! example using scripts in the BIORUBY sample folder:
! 
!   fastagrep.rb '/At|Dm/' database.seq | fastasort.rb
! 
! greps the database for Arabidopsis and Drosophila entries and sorts the output
! to FASTA.
  
  Other methods to extract specific data from database objects can be