[BioRuby-cvs] bioruby ChangeLog,1.85,1.86

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby
In directory dev.open-bio.org:/tmp/cvs-serv4930

Modified Files:
	ChangeLog 
Log Message:
 * lib/bio/appl/blast/xmlparser.rb, lib/bio/appl/blast/rexml.rb
   Bug fix: unit test sometime fails due to improper treatment of some
   Blast parameters and difference between rexml and xmlparser.
   To fix the bug, types of some parameters may be changed, e.g.
   Bio::Blast::Report#expect is changed to return Float or nil.
 * ChangeLog
   ChangeLog for today's changes to lib/bio/appl/blast/* and related files.  


Index: ChangeLog
===================================================================
RCS file: /home/repository/bioruby/bioruby/ChangeLog,v
retrieving revision 1.85
retrieving revision 1.86
diff -C2 -d -r1.85 -r1.86
*** ChangeLog	15 Apr 2008 13:54:38 -0000	1.85
--- ChangeLog	12 May 2008 13:11:45 -0000	1.86
***************
*** 1,2 ****
--- 1,23 ----
+ 2008-05-12  Naohisa Goto <ng at bioruby.org>
+ 
+ 	* lib/bio/appl/blast/xmlparser.rb, lib/bio/appl/blast/rexml.rb
+ 
+ 	  Bug fix: unit test sometime fails due to improper treatment of some
+ 	  Blast parameters and difference between rexml and xmlparser.
+ 	  To fix the bug, types of some parameters may be changed, e.g.
+ 	  Bio::Blast::Report#expect is changed to return Float or nil.
+ 
+ 	* lib/bio/appl/blast/format0.rb
+ 
+ 	  Bug fix: Bio::Blast::Default::Report#eff_space returns wrong value 
+ 	  ("Effective length of database"). It should return the value of
+ 	  "Effective search space".
+ 
+ 	* test/unit/bio/appl/blast/test_xmlparser.rb
+ 
+ 	  Bug fix: tests in test/unit/bio/appl/blast/test_report.rb were
+ 	  ignored because of conflicts of the names of test classes.
+ 	  Class name in test_xmlparser.rb is changed to fix the bug.
+ 
  2008-04-15  Naohisa Goto <ng at bioruby.org>