[BioRuby-cvs] bioruby/test/unit/bio test_reference.rb, 1.3, 1.3.2.1 test_feature.rb, 1.5, 1.5.2.1

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/test/unit/bio
In directory dev.open-bio.org:/tmp/cvs-serv10599/test/unit/bio

Modified Files:
      Tag: BRANCH-biohackathon2008
	test_reference.rb test_feature.rb 
Log Message:
Unit test codes are changed due to the changes of Bio::References and
Bio::Features (those are obsoleted but exist for backaward compatibility).


Index: test_feature.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/unit/bio/test_feature.rb,v
retrieving revision 1.5
retrieving revision 1.5.2.1
diff -C2 -d -r1.5 -r1.5.2.1
*** test_feature.rb	5 Apr 2007 23:35:42 -0000	1.5
--- test_feature.rb	8 May 2008 05:38:01 -0000	1.5.2.1
***************
*** 15,18 ****
--- 15,19 ----
  require 'test/unit'
  require 'bio/feature'
+ require 'bio/compat/features'
  
  
***************
*** 89,96 ****
--- 90,124 ----
    end
  
+   class NullStderr
+     def initialize
+       @log = []
+     end
+ 
+     def write(*arg)
+       #p arg
+       @log.push([ :write, *arg ])
+       nil
+     end
+ 
+     def method_missing(*arg)
+       #p arg
+       @log.push arg
+       nil
+     end
+   end
+ 
    class TestFeatures < Test::Unit::TestCase
      def setup
+       # To suppress warning messages, $stderr is replaced by dummy object.
+       @stderr_orig = $stderr
+       $stderr = NullStderr.new
+ 
        @obj = Bio::Features.new([Bio::Feature.new('gene', '1..615', [])])
      end
+ 
+     def teardown
+       # bring back $stderr
+       $stderr = @stderr_orig
+     end
      
      def test_features

Index: test_reference.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/unit/bio/test_reference.rb,v
retrieving revision 1.3
retrieving revision 1.3.2.1
diff -C2 -d -r1.3 -r1.3.2.1
*** test_reference.rb	5 Apr 2007 23:35:42 -0000	1.3
--- test_reference.rb	8 May 2008 05:38:01 -0000	1.3.2.1
***************
*** 15,18 ****
--- 15,19 ----
  require 'test/unit'
  require 'bio/reference'
+ require 'bio/compat/references'
  
  
***************
*** 173,179 ****
--- 174,202 ----
    end
  
+   class NullStderr
+     def initialize
+       @log = []
+     end
+ 
+     def write(*arg)
+       #p arg
+       @log.push([ :write, *arg ])
+       nil
+     end
+ 
+     def method_missing(*arg)
+       #p arg
+       @log.push arg
+       nil
+     end
+   end
+ 
    class TestReferences < Test::Unit::TestCase
  
      def setup
+       # To suppress warning messages, $stderr is replaced by dummy object.
+       @stderr_orig = $stderr
+       $stderr = NullStderr.new
+ 
        hash = {}
        ary = [Bio::Reference.new(hash),
***************
*** 182,185 ****
--- 205,213 ----
      end
  
+     def teardown
+       # bring back $stderr
+       $stderr = @stderr_orig
+     end
+ 
      def test_append
        hash = {}