[BioRuby-cvs] bioruby/lib/bio/db/genbank common.rb, 1.11.2.3, 1.11.2.4
Naohisa Goto
ngoto at dev.open-bio.org
Wed May 7 12:25:44 UTC 2008
Update of /home/repository/bioruby/bioruby/lib/bio/db/genbank
In directory dev.open-bio.org:/tmp/cvs-serv7778/lib/bio/db/genbank
Modified Files:
Tag: BRANCH-biohackathon2008
common.rb
Log Message:
added support for 'REMARK' (comment in reference)
Index: common.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/genbank/common.rb,v
retrieving revision 1.11.2.3
retrieving revision 1.11.2.4
diff -C2 -d -r1.11.2.3 -r1.11.2.4
*** common.rb 4 Mar 2008 10:32:55 -0000 1.11.2.3
--- common.rb 7 May 2008 12:25:42 -0000 1.11.2.4
***************
*** 138,142 ****
ary = []
toptag2array(get('REFERENCE')).each do |ref|
! hash = Hash.new('')
subtag2array(ref).each do |field|
case tag_get(field)
--- 138,142 ----
ary = []
toptag2array(get('REFERENCE')).each do |ref|
! hash = Hash.new
subtag2array(ref).each do |field|
case tag_get(field)
***************
*** 175,178 ****
--- 175,181 ----
when /PUBMED/
hash['pubmed'] = truncate(tag_cut(field))
+ when /REMARK/
+ hash['comments'] ||= []
+ hash['comments'].push truncate(tag_cut(field))
end
end
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