[BioRuby-cvs] bioruby/lib/bio/db/genbank common.rb, 1.11.2.2, 1.11.2.3

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/db/genbank
In directory dev.open-bio.org:/tmp/cvs-serv7470/lib/bio/db/genbank

Modified Files:
      Tag: BRANCH-biohackathon2008
	common.rb 
Log Message:
Changed not to use Bio::References and Bio::Features.
To keep backward compatibility, BackwardCompatibility modules is used
to extend an array.


Index: common.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/genbank/common.rb,v
retrieving revision 1.11.2.2
retrieving revision 1.11.2.3
diff -C2 -d -r1.11.2.2 -r1.11.2.3
*** common.rb	3 Mar 2008 18:30:50 -0000	1.11.2.2
--- common.rb	4 Mar 2008 10:32:55 -0000	1.11.2.3
***************
*** 179,183 ****
          ary.push(Reference.new(hash))
        end
!       @data['REFERENCE'] = References.new(ary)
      end
      if block_given?
--- 179,183 ----
          ary.push(Reference.new(hash))
        end
!       @data['REFERENCE'] = ary.extend(Bio::References::BackwardCompatibility)
      end
      if block_given?
***************
*** 197,202 ****
  
  
!   # FEATURES -- Returns contents of the FEATURES record as a Bio::Features
!   # object.
    def features
      unless @data['FEATURES']
--- 197,202 ----
  
  
!   # FEATURES -- Returns contents of the FEATURES record as an array of
!   # Bio::Feature objects.
    def features
      unless @data['FEATURES']
***************
*** 240,244 ****
        end
  
!       @data['FEATURES'] = Features.new(ary)
      end
      if block_given?
--- 240,244 ----
        end
  
!       @data['FEATURES'] = ary.extend(Bio::Features::BackwardCompatibility)
      end
      if block_given?