[BioRuby-cvs] bioruby/lib/bio/db/pdb atom.rb, 1.6, 1.7 chain.rb, 1.6, 1.7 chemicalcomponent.rb, 1.1, 1.2 model.rb, 1.7, 1.8 pdb.rb, 1.19, 1.20 residue.rb, 1.10, 1.11 utils.rb, 1.5, 1.6
Katayama Toshiaki
k at dev.open-bio.org
Thu Mar 29 12:50:51 UTC 2007
Update of /home/repository/bioruby/bioruby/lib/bio/db/pdb
In directory dev.open-bio.org:/tmp/cvs-serv11658/db/pdb
Modified Files:
atom.rb chain.rb chemicalcomponent.rb model.rb pdb.rb
residue.rb utils.rb
Log Message:
* license is changed from LGPL to Ruby's with permission from authors
Index: atom.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/atom.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** atom.rb 8 Jan 2006 12:59:04 -0000 1.6
--- atom.rb 29 Mar 2007 12:50:49 -0000 1.7
***************
*** 5,27 ****
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: LGPL
! #
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = Bio::PDB::Coordinate
--- 5,11 ----
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: Ruby's
#
! # $Id$
#
# = Bio::PDB::Coordinate
Index: residue.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/residue.rb,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11
*** residue.rb 20 Jan 2006 13:54:08 -0000 1.10
--- residue.rb 29 Mar 2007 12:50:49 -0000 1.11
***************
*** 5,27 ****
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: LGPL
! #
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = Bio::PDB::Residue
--- 5,11 ----
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: Ruby's
#
! # $Id$
#
# = Bio::PDB::Residue
Index: model.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/model.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** model.rb 20 Jan 2006 13:54:08 -0000 1.7
--- model.rb 29 Mar 2007 12:50:49 -0000 1.8
***************
*** 5,27 ****
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: LGPL
! #
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = Bio::PDB::Model
--- 5,11 ----
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: Ruby's
#
! # $Id$
#
# = Bio::PDB::Model
Index: pdb.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/pdb.rb,v
retrieving revision 1.19
retrieving revision 1.20
diff -C2 -d -r1.19 -r1.20
*** pdb.rb 28 Mar 2007 10:25:17 -0000 1.19
--- pdb.rb 29 Mar 2007 12:50:49 -0000 1.20
***************
*** 5,28 ****
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
# Alex Gutteridge <alexg at ebi.ac.uk>
! # License:: LGPL
#
# $Id$
#
- #--
- # This library is free software; you can redistribute it and/or
- # modify it under the terms of the GNU Lesser General Public
- # License as published by the Free Software Foundation; either
- # version 2 of the License, or (at your option) any later version.
- #
- # This library is distributed in the hope that it will be useful,
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- # Lesser General Public License for more details.
- #
- # You should have received a copy of the GNU Lesser General Public
- # License along with this library; if not, write to the Free Software
- # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- #++
- #
# = About Bio::PDB
#
--- 5,12 ----
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
# Alex Gutteridge <alexg at ebi.ac.uk>
! # License:: Ruby's
#
# $Id$
#
# = About Bio::PDB
#
Index: utils.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/utils.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** utils.rb 8 Jan 2006 12:59:04 -0000 1.5
--- utils.rb 29 Mar 2007 12:50:49 -0000 1.6
***************
*** 5,27 ****
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: LGPL
! #
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = Bio::PDB::Utils
--- 5,11 ----
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: Ruby's
#
! # $Id$
#
# = Bio::PDB::Utils
Index: chemicalcomponent.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/chemicalcomponent.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** chemicalcomponent.rb 29 Jan 2006 06:54:13 -0000 1.1
--- chemicalcomponent.rb 29 Mar 2007 12:50:49 -0000 1.2
***************
*** 4,26 ****
# Copyright:: Copyright (C) 2006
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License:: LGPL
! #
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = About Bio::PDB::ChemicalComponent
--- 4,10 ----
# Copyright:: Copyright (C) 2006
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License:: Ruby's
#
! # $Id$
#
# = About Bio::PDB::ChemicalComponent
Index: chain.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/chain.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** chain.rb 20 Jan 2006 13:54:08 -0000 1.6
--- chain.rb 29 Mar 2007 12:50:49 -0000 1.7
***************
*** 5,27 ****
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: LGPL
#
! # $Id$
! #
! #--
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #++
#
# = Bio::PDB::Chain
--- 5,11 ----
# Alex Gutteridge <alexg at ebi.ac.uk>
# Naohisa Goto <ng at bioruby.org>
! # License:: Ruby's
#
! # $Id$
#
# = Bio::PDB::Chain
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