[BioRuby-cvs] bioruby/lib/bio/io ensembl.rb,1.5,1.6

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv6977/io

Modified Files:
	ensembl.rb 
Log Message:
* exportview is fixed to extract body from Net::HTTP response


Index: ensembl.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ensembl.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** ensembl.rb	28 Mar 2007 12:01:48 -0000	1.5
--- ensembl.rb	28 Mar 2007 12:31:48 -0000	1.6
***************
*** 14,22 ****
  # == Examples
  #
! #  seq = Bio::Ensembl.human.exportview(1, 1000, 100000)
! #  gff = Bio::Ensembl.human.exportview(1, 1000, 100000, ['gene'])
  #
! #  seq = Bio::Ensembl.mouse.exportview(1, 1000, 100000)
! #  gff = Bio::Ensembl.mouse.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])
  #
  #  
--- 14,27 ----
  # == Examples
  #
! #  human = Bio::Ensembl.new('Homo_sapiens')
! #  seq = human.exportview(1, 1000, 100000)
! #  gff = human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])
  #
! #  human = Bio::Ensembl.human
! #  seq = human.exportview(1, 1000, 100000)
! #  gff = human.exportview(1, 1000, 100000, ['gene'])
! #
! #  seq = Bio::Ensembl.human.exportview(1, 1000, 100000)
! #  gff = Bio::Ensembl.human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])
  #
  #  
***************
*** 28,33 ****
  
  require 'bio/command'
- require 'uri'
- require 'cgi'
  
  module Bio
--- 33,36 ----
***************
*** 166,170 ****
      params = defaults.update(options)
  
!     Bio::Command.post_form("#{@uri}/exportview", params)
    end
  
--- 169,175 ----
      params = defaults.update(options)
  
!     result, = Bio::Command.post_form("#{@uri}/exportview", params)
! 
!     return result.body
    end