[BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.56,1.57

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv28875/lib/bio/io

Modified Files:
	flatfile.rb 
Log Message:
UniProt format autodetection was changed to follow the change of
UniProtKB release 9.0 of 31-Oct-2006.


Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.56
retrieving revision 1.57
diff -C2 -d -r1.56 -r1.57
*** flatfile.rb	8 Mar 2007 00:27:18 -0000	1.56
--- flatfile.rb	27 Mar 2007 09:26:03 -0000	1.57
***************
*** 1120,1125 ****
            embl     = RuleRegexp[ 'Bio::EMBL',
              /^ID   .+\; .*(DNA|RNA|XXX)\;/ ],
!           sptr     = RuleRegexp[ 'Bio::SPTR',
!             /^ID   .+\; *PRT\;/ ],
            prosite  = RuleRegexp[ 'Bio::PROSITE',
              /^ID   [-A-Za-z0-9_\.]+\; (PATTERN|RULE|MATRIX)\.$/ ],
--- 1120,1126 ----
            embl     = RuleRegexp[ 'Bio::EMBL',
              /^ID   .+\; .*(DNA|RNA|XXX)\;/ ],
!           sptr     = RuleRegexp2[ 'Bio::SPTR',
!             /^ID   .+\; *PRT\;/,
!             /^ID   [-A-Za-z0-9_\.]+ .+\; *[0-9]+ *AA\./ ],
            prosite  = RuleRegexp[ 'Bio::PROSITE',
              /^ID   [-A-Za-z0-9_\.]+\; (PATTERN|RULE|MATRIX)\.$/ ],