[BioRuby-cvs] bioruby/test/data/embl AB090716.embl.rel89,NONE,1.1

[Mitsuteru C. Nakao]

Update of /home/repository/bioruby/bioruby/test/data/embl
In directory dev.open-bio.org:/tmp/cvs-serv7300/test/data/embl

Added Files:
	AB090716.embl.rel89 
Log Message:
* Fixed a bug for parsing id_line in the EMBL release 89 format 
  reported by Michael Han.
* Added the unit test and data files for EMBL release 89 format.


--- NEW FILE: AB090716.embl.rel89 ---
ID   AB090716; SV 1; linear; genomic DNA; STD; VRT; 166 BP.
XX
AC   AB090716;
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DT   25-OCT-2002 (Rel. 73, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE   Haplochromis sp. 'muzu, rukwa' LWS gene for long wavelength-sensitive
DE   opsin, partial cds, specimen_voucher:specimen No. HT-9361.
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KW   .
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OS   Haplochromis sp. 'muzu, rukwa'
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes; Labroidei;
OC   Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
OC   Haplochromis.
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RN   [1]
RP   1-166
RA   Terai Y., Mayer W.E., Klein J., Tichy H., Okada N.;
RT   ;
RL   Submitted (26-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   Yohey Terai, Tokyo Institute of Technology, Graduate School of Bioscience
RL   and Biotechnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa
RL   226-8501, Japan (E-mail:yterai at bio.titech.ac.jp, Tel:81-45-924-5744,
RL   Fax:81-45-924-5835)
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RN   [2]
RX   DOI; 10.1073/pnas.232561099.
RX   PUBMED; 12438648.
RA   Terai Y., Mayer W.E., Klein J., Tichy H., Okada N.;
RT   "The effect of selection on a long wavelength-sensitive (LWS) opsin gene of
RT   Lake Victoria cichlid fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(24):15501-15506(2002).
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FH   Key             Location/Qualifiers
FH
FT   source          1..166
FT                   /organism="Haplochromis sp. 'muzu, rukwa'"
FT                   /mol_type="genomic DNA"
FT                   /specimen_voucher="specimen No. HT-9361"
FT                   /tissue_type="piece of fin"
FT                   /db_xref="taxon:205497"
FT   CDS             <1..>166
FT                   /codon_start=2
FT                   /gene="LWS"
FT                   /product="long wavelength-sensitive opsin"
FT                   /db_xref="UniProtKB/TrEMBL:Q8AUS6"
FT                   /protein_id="BAC22028.1"
FT                   /translation="FWPHGLKTSCGPDVFSGSEDPGVQSYMIVLMITCCFIPLAIIILC
FT                   YLAVWMAIRA"
FT   exon            1..166
FT                   /gene="LWS"
FT                   /product="long wavelength-sensitive opsin"
FT                   /number=4
XX
SQ   Sequence 166 BP; 29 A; 42 C; 41 G; 54 T; 0 other;
     gttctggcct catggactga agacttcctg tggacctgat gtgttcagtg gaagtgaaga        60
     ccctggagta cagtcctaca tgattgttct catgattact tgctgtttca tccccctggc       120
     tatcatcatc ctgtgctacc ttgctgtgtg gatggccatc cgtgct                      166
//