[BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.55,1.56

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv14152

Modified Files:
	flatfile.rb 
Log Message:
* Bio::KEGG::DRUG is added
* Bio::KEGG::KO is renamed to Bio::KEGG::ORTHOLOG


Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.55
retrieving revision 1.56
diff -C2 -d -r1.55 -r1.56
*** flatfile.rb	12 Feb 2007 09:59:37 -0000	1.55
--- flatfile.rb	8 Mar 2007 00:27:18 -0000	1.56
***************
*** 1145,1150 ****
            brite    = RuleRegexp[ 'Bio::KEGG::BRITE',
              /^Entry           [A-Z0-9]+/ ],
!           ko       = RuleRegexp[ 'Bio::KEGG::KO',
              /^ENTRY       .+ KO\s*/ ],
            glycan   = RuleRegexp[ 'Bio::KEGG::GLYCAN',
              /^ENTRY       .+ Glycan\s*/ ],
--- 1145,1152 ----
            brite    = RuleRegexp[ 'Bio::KEGG::BRITE',
              /^Entry           [A-Z0-9]+/ ],
!           ortholog = RuleRegexp[ 'Bio::KEGG::ORTHOLOG',
              /^ENTRY       .+ KO\s*/ ],
+           drug     = RuleRegexp[ 'Bio::KEGG::DRUG',
+             /^ENTRY       .+ Drug\s*/ ],
            glycan   = RuleRegexp[ 'Bio::KEGG::GLYCAN',
              /^ENTRY       .+ Glycan\s*/ ],
***************
*** 1247,1252 ****
          #aaindex.is_prior_to litdb
          #litdb.is_prior_to brite
!         brite.is_prior_to ko
!         ko.is_prior_to glycan
          glycan.is_prior_to enzyme
          enzyme.is_prior_to compound
--- 1249,1255 ----
          #aaindex.is_prior_to litdb
          #litdb.is_prior_to brite
!         brite.is_prior_to ortholog
!         ortholog.is_prior_to drug
!         drug.is_prior_to glycan
          glycan.is_prior_to enzyme
          enzyme.is_prior_to compound