[BioRuby-cvs] bioruby/lib/bio/db/kegg glycan.rb,1.3,1.4

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/db/kegg
In directory dev.open-bio.org:/tmp/cvs-serv13987

Modified Files:
	glycan.rb 
Log Message:
* bindings method is removed
* comment and remarks methods are added
* orthologs and dblinks methods are changed to use lines_fetch


Index: glycan.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/kegg/glycan.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** glycan.rb	19 Sep 2006 05:53:13 -0000	1.3
--- glycan.rb	8 Mar 2007 00:14:16 -0000	1.4
***************
*** 64,84 ****
    end
  
-   # BINDING
-   def bindings
-     unless @data['BINDING']
-       ary = Array.new
-       lines = lines_fetch('BINDING')
-       lines.each do |line|
-         if /^\S/.match(line)
-           ary << line
-         else
-           ary.last << " #{line.strip}"
-         end
-       end
-       @data['BINDING'] = ary
-     end
-     @data['BINDING']
-   end
- 
    # COMPOUND
    def compounds
--- 64,67 ----
***************
*** 118,135 ****
    def orthologs
      unless @data['ORTHOLOG']
!       ary = Array.new
!       lines = lines_fetch('ORTHOLOG')
!       lines.each do |line|
!         if /^\S/.match(line)
!           ary << line
!         else
!           ary.last << " #{line.strip}"
!         end
!       end
!       @data['ORTHOLOG'] = ary
      end
      @data['ORTHOLOG']
    end
  
    # REFERENCE
    def references
--- 101,119 ----
    def orthologs
      unless @data['ORTHOLOG']
!       @data['ORTHOLOG'] = lines_fetch('ORTHOLOG')
      end
      @data['ORTHOLOG']
    end
  
+   # COMMENT
+   def comment
+     field_fetch('COMMENT')
+   end
+ 
+   # REMARK
+   def remark
+     field_fetch('REMARK')
+   end
+ 
    # REFERENCE
    def references
***************
*** 152,165 ****
    def dblinks
      unless @data['DBLINKS']
!       ary = Array.new
!       lines = lines_fetch('DBLINKS')
!       lines.each do |line|
!         if /^\S/.match(line)
!           ary << line
!         else
!           ary.last << " #{line.strip}"
!         end
!       end
!       @data['DBLINKS'] = ary
      end
      @data['DBLINKS']
--- 136,140 ----
    def dblinks
      unless @data['DBLINKS']
!       @data['DBLINKS'] = lines_fetch('DBLINKS')
      end
      @data['DBLINKS']