[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/range/sequence_range calculated_cuts.rb, 1.6, 1.7 fragment.rb, 1.5, 1.6 fragments.rb, 1.4, 1.5

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range
In directory dev.open-bio.org:/tmp/cvs-serv21244/restriction_enzyme/range/sequence_range

Modified Files:
	calculated_cuts.rb fragment.rb fragments.rb 
Log Message:
* autoloadified


Index: calculated_cuts.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** calculated_cuts.rb	5 Apr 2007 23:35:42 -0000	1.6
--- calculated_cuts.rb	16 Jul 2007 19:28:48 -0000	1.7
***************
*** 1,4 ****
  #
! # bio/util/restrction_enzyme/range/sequence_range/calculated_cuts.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
--- 1,4 ----
  #
! # bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
***************
*** 9,28 ****
  #
  
! require 'bio/util/restriction_enzyme'  # test/runner.rb wont load without this
! require 'bio/util/restriction_enzyme/cut_symbol'
! require 'bio/util/restriction_enzyme/string_formatting'
  
! module Bio; end
! class Bio::RestrictionEnzyme
  class Range
  class SequenceRange
  
- #
- # bio/util/restrction_enzyme/range/sequence_range/calculated_cuts.rb - 
- #
- # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
- # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
- # License::   The Ruby License
- # 
  # cc = CalculatedCuts.new(@size)
  # cc.add_cuts_from_cut_ranges(@cut_ranges)
--- 9,19 ----
  #
  
! require 'bio/util/restriction_enzyme'
  
! module Bio
! class RestrictionEnzyme
  class Range
  class SequenceRange
  
  # cc = CalculatedCuts.new(@size)
  # cc.add_cuts_from_cut_ranges(@cut_ranges)
***************
*** 248,250 ****
  end # SequenceRange
  end # Range
! end # Bio::RestrictionEnzyme
--- 239,242 ----
  end # SequenceRange
  end # Range
! end # RestrictionEnzyme
! end # Bio

Index: fragment.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** fragment.rb	13 May 2007 04:08:02 -0000	1.5
--- fragment.rb	16 Jul 2007 19:28:48 -0000	1.6
***************
*** 1,4 ****
  #
! # bio/util/restrction_enzyme/range/sequence_range/fragment.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
--- 1,4 ----
  #
! # bio/util/restriction_enzyme/range/sequence_range/fragment.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
***************
*** 9,28 ****
  #
  
! require 'bio/util/restriction_enzyme/range/cut_ranges'
! require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
! require 'bio'
  
! module Bio; end
! class Bio::RestrictionEnzyme
  class Range
  class SequenceRange
  
- #
- # bio/util/restrction_enzyme/range/sequence_range/fragment.rb - 
- #
- # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
- # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
- # License::   The Ruby License
- #
  class Fragment
  
--- 9,19 ----
  #
  
! require 'bio/util/restriction_enzyme'
  
! module Bio
! class RestrictionEnzyme
  class Range
  class SequenceRange
  
  class Fragment
  
***************
*** 57,59 ****
  end # SequenceRange
  end # Range
! end # Bio::RestrictionEnzyme
--- 48,51 ----
  end # SequenceRange
  end # Range
! end # RestrictionEnzyme
! end # Bio

Index: fragments.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** fragments.rb	5 Apr 2007 23:35:42 -0000	1.4
--- fragments.rb	16 Jul 2007 19:28:48 -0000	1.5
***************
*** 1,4 ****
  #
! # bio/util/restrction_enzyme/analysis/fragments.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
--- 1,4 ----
  #
! # bio/util/restriction_enzyme/analysis/fragments.rb - 
  #
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
***************
*** 9,24 ****
  #
  
! module Bio; end
! class Bio::RestrictionEnzyme
  class Range
  class SequenceRange
  
- #
- # bio/util/restrction_enzyme/range/sequence_range/fragments.rb - 
- #
- # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
- # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
- # License::   The Ruby License
- #
  class Fragments < Array
    
--- 9,19 ----
  #
  
! require 'bio/util/restriction_enzyme'
! 
! module Bio
! class RestrictionEnzyme
  class Range
  class SequenceRange
  
  class Fragments < Array
    
***************
*** 43,45 ****
  end # SequenceRange
  end # Range
! end # Bio::RestrictionEnzyme
--- 38,41 ----
  end # SequenceRange
  end # Range
! end # RestrictionEnzyme
! end # Bio