[BioRuby-cvs] bioruby/lib/bio/util restriction_enzyme.rb, 1.15, 1.16
Katayama Toshiaki
k at dev.open-bio.org
Mon Jul 16 19:28:50 UTC 2007
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Update of /home/repository/bioruby/bioruby/lib/bio/util
In directory dev.open-bio.org:/tmp/cvs-serv21244
Modified Files:
restriction_enzyme.rb
Log Message:
* autoloadified
Index: restriction_enzyme.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** restriction_enzyme.rb 13 May 2007 04:08:02 -0000 1.15
--- restriction_enzyme.rb 16 Jul 2007 19:28:48 -0000 1.16
***************
*** 9,27 ****
#
- require 'bio/db/rebase'
- require 'bio/util/restriction_enzyme/double_stranded'
- require 'bio/util/restriction_enzyme/single_strand'
- require 'bio/util/restriction_enzyme/cut_symbol'
- require 'bio/util/restriction_enzyme/analysis'
-
module Bio #:nodoc:
! #
! # bio/util/restriction_enzyme.rb - Digests DNA based on restriction enzyme cut patterns
! #
! # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
! # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: The Ruby License
! #
# = Description
#
--- 9,16 ----
#
module Bio #:nodoc:
! autoload :REBASE, 'bio/db/rebase'
!
# = Description
#
***************
*** 124,129 ****
# * Circular DNA cutting
#
!
! class Bio::RestrictionEnzyme
include CutSymbol
extend CutSymbol
--- 113,129 ----
# * Circular DNA cutting
#
!
! class RestrictionEnzyme
!
! #require 'bio/util/restriction_enzyme/cut_symbol'
!
! autoload :CutSymbol, 'bio/util/restriction_enzyme/cut_symbol'
! autoload :StringFormatting, 'bio/util/restriction_enzyme/string_formatting'
! autoload :SingleStrand, 'bio/util/restriction_enzyme/single_strand'
! autoload :SingleStrandComplement, 'bio/util/restriction_enzyme/single_strand_complement'
! autoload :DoubleStranded, 'bio/util/restriction_enzyme/double_stranded'
! autoload :Analysis, 'bio/util/restriction_enzyme/analysis'
! autoload :Range, 'bio/util/restriction_enzyme/range/sequence_range'
!
include CutSymbol
extend CutSymbol
***************
*** 226,228 ****
end
end # RestrictionEnzyme
! end # Bio
\ No newline at end of file
--- 226,228 ----
end
end # RestrictionEnzyme
! end # Bio
- Previous message: [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis.rb, 1.19, 1.20 analysis_basic.rb, 1.15, 1.16 cut_symbol.rb, 1.5, 1.6 double_stranded.rb, 1.10, 1.11 single_strand.rb, 1.6, 1.7 single_strand_complement.rb, 1.4, 1.5 string_formatting.rb, 1.5, 1.6
- Next message: [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/double_stranded aligned_strands.rb, 1.5, 1.6 cut_location_pair.rb, 1.8, 1.9 cut_location_pair_in_enzyme_notation.rb, 1.6, 1.7 cut_locations.rb, 1.5, 1.6 cut_locations_in_enzyme_notation.rb, 1.6, 1.7
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