[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/range sequence_range.rb, 1.1, 1.2 vertical_cut_range.rb, 1.1, 1.2

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range
In directory dev.open-bio.org:/tmp/cvs-serv15871/restriction_enzyme/range

Modified Files:
	sequence_range.rb vertical_cut_range.rb 
Log Message:


Index: vertical_cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** vertical_cut_range.rb	2 Jan 2007 00:13:07 -0000	1.1
--- vertical_cut_range.rb	5 Jan 2007 06:03:22 -0000	1.2
***************
*** 25,28 ****
--- 25,29 ----
  # License::   Distributes under the same terms as Ruby
  #
+ # FIXME docs are kind of out of date.  Change this to VerticalAndHorizontalCutRange
  class VerticalCutRange < CutRange
    attr_reader :p_cut_left, :p_cut_right

Index: sequence_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** sequence_range.rb	2 Jan 2007 00:13:07 -0000	1.1
--- sequence_range.rb	5 Jan 2007 06:03:22 -0000	1.2
***************
*** 30,33 ****
--- 30,34 ----
  # License::   Distributes under the same terms as Ruby
  #
+ # FIXME algorithm heavy, needs better docs
  class SequenceRange
  
***************
*** 64,70 ****
    end
  
! =begin
! Special Case: Horizontal cuts at beginning or end of strand
! =end
  
    Bin = Struct.new(:c, :p)
--- 65,69 ----
    end
  
!   # NOTE Special Case: Horizontal cuts at beginning or end of strand
  
    Bin = Struct.new(:c, :p)