[BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme/analysis test_calculated_cuts.rb, 1.2, 1.3 test_sequence_range.rb, 1.2, 1.3

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/test/unit/bio/util/restriction_enzyme/analysis
In directory dev.open-bio.org:/tmp/cvs-serv2765

Modified Files:
	test_calculated_cuts.rb test_sequence_range.rb 
Log Message:


Index: test_sequence_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** test_sequence_range.rb	31 Dec 2006 18:46:15 -0000	1.2
--- test_sequence_range.rb	2 Jan 2007 00:22:27 -0000	1.3
***************
*** 14,24 ****
  
  require 'test/unit'
! require 'bio/util/restriction_enzyme/analysis/sequence_range'
! require 'bio/util/restriction_enzyme/analysis/fragments'
  
! require 'bio/util/restriction_enzyme/analysis/cut_range'
! require 'bio/util/restriction_enzyme/analysis/horizontal_cut_range'
! require 'bio/util/restriction_enzyme/analysis/vertical_cut_range'
! require 'bio/util/restriction_enzyme/analysis/cut_ranges'
  
  module Bio #:nodoc:
--- 14,24 ----
  
  require 'test/unit'
! require 'bio/util/restriction_enzyme/range/sequence_range'
! require 'bio/util/restriction_enzyme/range/sequence_range/fragments'
  
! require 'bio/util/restriction_enzyme/range/cut_range'
! require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
! require 'bio/util/restriction_enzyme/range/vertical_cut_range'
! require 'bio/util/restriction_enzyme/range/cut_ranges'
  
  module Bio #:nodoc:
***************
*** 27,37 ****
  
    def setup
!     @t = Bio::RestrictionEnzyme::Analysis::SequenceRange
!     @fs = Bio::RestrictionEnzyme::Analysis::Fragments
      #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
  
!     @vcr = Bio::RestrictionEnzyme::Analysis::VerticalCutRange
!     @crs = Bio::RestrictionEnzyme::Analysis::CutRanges
!     @hcr = Bio::RestrictionEnzyme::Analysis::HorizontalCutRange
  
      @obj_1 = @t.new(0,5)
--- 27,37 ----
  
    def setup
!     @t = Bio::RestrictionEnzyme::Range::SequenceRange
!     @fs = Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
      #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
  
!     @vcr = Bio::RestrictionEnzyme::Range::VerticalCutRange
!     @crs = Bio::RestrictionEnzyme::Range::CutRanges
!     @hcr = Bio::RestrictionEnzyme::Range::HorizontalCutRange
  
      @obj_1 = @t.new(0,5)

Index: test_calculated_cuts.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** test_calculated_cuts.rb	31 Dec 2006 18:46:15 -0000	1.2
--- test_calculated_cuts.rb	2 Jan 2007 00:22:27 -0000	1.3
***************
*** 14,22 ****
  
  require 'test/unit'
! require 'bio/util/restriction_enzyme/analysis/calculated_cuts'
! require 'bio/util/restriction_enzyme/analysis/cut_range'
! require 'bio/util/restriction_enzyme/analysis/horizontal_cut_range'
! require 'bio/util/restriction_enzyme/analysis/vertical_cut_range'
! require 'bio/util/restriction_enzyme/analysis/cut_ranges'
  
  module Bio #:nodoc:
--- 14,22 ----
  
  require 'test/unit'
! require 'bio/util/restriction_enzyme/range/sequence_range/calculated_cuts'
! require 'bio/util/restriction_enzyme/range/cut_range'
! require 'bio/util/restriction_enzyme/range/cut_ranges'
! require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
! require 'bio/util/restriction_enzyme/range/vertical_cut_range'
  
  module Bio #:nodoc:
***************
*** 25,32 ****
  
    def setup
!     @t = Bio::RestrictionEnzyme::Analysis::CalculatedCuts
!     @vcr = Bio::RestrictionEnzyme::Analysis::VerticalCutRange
!     @crs = Bio::RestrictionEnzyme::Analysis::CutRanges
!     @hcr = Bio::RestrictionEnzyme::Analysis::HorizontalCutRange
  
      #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
--- 25,32 ----
  
    def setup
!     @t = Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
!     @vcr = Bio::RestrictionEnzyme::Range::VerticalCutRange
!     @crs = Bio::RestrictionEnzyme::Range::CutRanges
!     @hcr = Bio::RestrictionEnzyme::Range::HorizontalCutRange
  
      #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )