[BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.53,1.54

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv9473/lib/bio/io

Modified Files:
	flatfile.rb 
Log Message:
* KEGG EGENES supported


Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.53
retrieving revision 1.54
diff -C2 -d -r1.53 -r1.54
*** flatfile.rb	15 Dec 2006 16:54:25 -0000	1.53
--- flatfile.rb	12 Feb 2007 02:15:45 -0000	1.54
***************
*** 1156,1160 ****
            ],
            genes    = RuleRegexp[ 'Bio::KEGG::GENES',
!             /^ENTRY       .+ (CDS|gene|.*RNA) / ],
            genome   = RuleRegexp[ 'Bio::KEGG::GENOME',
              /^ENTRY       [a-z]+$/ ],
--- 1156,1160 ----
            ],
            genes    = RuleRegexp[ 'Bio::KEGG::GENES',
!             /^ENTRY       .+ (CDS|gene|.*RNA|Contig) / ],
            genome   = RuleRegexp[ 'Bio::KEGG::GENOME',
              /^ENTRY       [a-z]+$/ ],