[BioRuby-cvs] bioruby/lib/bio/db/kegg enzyme.rb, 0.11, 0.12 genes.rb, 0.25, 0.26 glycan.rb, 1.6, 1.7

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/db/kegg
In directory dev.open-bio.org:/tmp/cvs-serv23382/lib/bio/db/kegg

Modified Files:
	enzyme.rb genes.rb glycan.rb 
Log Message:
* ORTHOLOG field is fixed to ORTHOLOGY


Index: genes.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/kegg/genes.rb,v
retrieving revision 0.25
retrieving revision 0.26
diff -C2 -d -r0.25 -r0.26
*** genes.rb	5 Apr 2007 23:35:41 -0000	0.25
--- genes.rb	14 Dec 2007 16:20:38 -0000	0.26
***************
*** 138,142 ****
  
    def orthologs
!     lines_fetch('ORTHOLOG')
    end
  
--- 138,142 ----
  
    def orthologs
!     lines_fetch('ORTHOLOGY')
    end
  

Index: enzyme.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/kegg/enzyme.rb,v
retrieving revision 0.11
retrieving revision 0.12
diff -C2 -d -r0.11 -r0.12
*** enzyme.rb	5 Apr 2007 23:35:41 -0000	0.11
--- enzyme.rb	14 Dec 2007 16:20:38 -0000	0.12
***************
*** 107,113 ****
    end
  
!   # ORTHOLOG
    def orthologs
!     lines_fetch('ORTHOLOG')
    end
  
--- 107,113 ----
    end
  
!   # ORTHOLOGY
    def orthologs
!     lines_fetch('ORTHOLOGY')
    end
  

Index: glycan.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/kegg/glycan.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** glycan.rb	28 Jun 2007 11:27:24 -0000	1.6
--- glycan.rb	14 Dec 2007 16:20:38 -0000	1.7
***************
*** 95,104 ****
    end
  
!   # ORTHOLOG
    def orthologs
!     unless @data['ORTHOLOG']
!       @data['ORTHOLOG'] = lines_fetch('ORTHOLOG')
      end
!     @data['ORTHOLOG']
    end
  
--- 95,104 ----
    end
  
!   # ORTHOLOGY
    def orthologs
!     unless @data['ORTHOLOGY']
!       @data['ORTHOLOGY'] = lines_fetch('ORTHOLOGY')
      end
!     @data['ORTHOLOGY']
    end