[BioRuby-cvs] bioruby/lib/bio/appl/blast format0.rb,1.22,1.23

Katayama Toshiaki k at dev.open-bio.org
Fri Dec 14 16:09:39 UTC 2007


Update of /home/repository/bioruby/bioruby/lib/bio/appl/blast
In directory dev.open-bio.org:/tmp/cvs-serv23128/lib/bio/appl/blast

Modified Files:
	format0.rb 
Log Message:
* added target_id for compatibility with other format parsers


Index: format0.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/format0.rb,v
retrieving revision 1.22
retrieving revision 1.23
diff -C2 -d -r1.22 -r1.23
*** format0.rb	21 Apr 2007 08:58:17 -0000	1.22
--- format0.rb	14 Dec 2007 16:09:36 -0000	1.23
***************
*** 861,867 ****
            def definition; parse_hitname; @definition; end
  
            #--
            # Aliases to keep compatibility with Bio::Fasta::Report::Hit.
-           #alias target_id accession
            alias target_def definition
            alias target_len len
--- 861,868 ----
            def definition; parse_hitname; @definition; end
  
+           def target_id; definition[/^\s*(\S+)/]; end
+ 
            #--
            # Aliases to keep compatibility with Bio::Fasta::Report::Hit.
            alias target_def definition
            alias target_len len




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