[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis_basic.rb, 1.12, 1.13

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme
In directory dev.open-bio.org:/tmp/cvs-serv23176/bio/util/restriction_enzyme

Modified Files:
	analysis_basic.rb 
Log Message:
Move cut_with_enzyme to Bio::Sequence::NA

Index: analysis_basic.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis_basic.rb,v
retrieving revision 1.12
retrieving revision 1.13
diff -C2 -d -r1.12 -r1.13
*** analysis_basic.rb	5 Apr 2007 23:35:42 -0000	1.12
--- analysis_basic.rb	23 Apr 2007 16:43:51 -0000	1.13
***************
*** 10,32 ****
  
  require 'bio'
- class Bio::Sequence::NA
-   # Example:
-   #
-   #   seq = Bio::Sequence::NA.new('gaattc')
-   #   cuts = seq.cut_with_enzyme('EcoRI')
-   #
-   # _or_
-   #
-   #   seq = Bio::Sequence::NA.new('gaattc')
-   #   cuts = seq.cut_with_enzyme('g^aattc')
-   # ---
-   # See Bio::RestrictionEnzyme::Analysis.cut
-   # 
-   # NOTE: move this into Bio::Sequence::NA
-   def cut_with_enzyme(*args)
-     Bio::RestrictionEnzyme::Analysis.cut(self, *args)
-   end
-   alias cut_with_enzymes cut_with_enzyme
- end
  
  require 'set'  # for method create_enzyme_actions
--- 10,13 ----