[BioRuby-cvs] bioruby/lib/bio/db aaindex.rb, 1.19, 1.20 fantom.rb, 1.13, 1.14 fasta.rb, 1.27, 1.28 gff.rb, 1.7, 1.8 go.rb, 1.10, 1.11 lasergene.rb, 1.2, 1.3 litdb.rb, 0.9, 0.10 medline.rb, 1.15, 1.16 nbrf.rb, 1.9, 1.10 newick.rb, 1.6, 1.7 nexus.rb, 1.2, 1.3 pdb.rb, 1.7, 1.8 rebase.rb, 1.7, 1.8 soft.rb, 1.1, 1.2 transfac.rb, 1.11, 1.12
Trevor Wennblom
trevor at dev.open-bio.org
Thu Apr 5 23:35:42 UTC 2007
Update of /home/repository/bioruby/bioruby/lib/bio/db
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/db
Modified Files:
aaindex.rb fantom.rb fasta.rb gff.rb go.rb lasergene.rb
litdb.rb medline.rb nbrf.rb newick.rb nexus.rb pdb.rb
rebase.rb soft.rb transfac.rb
Log Message:
Standardize on The Ruby License
Index: aaindex.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/aaindex.rb,v
retrieving revision 1.19
retrieving revision 1.20
diff -C2 -d -r1.19 -r1.20
*** aaindex.rb 8 May 2006 14:34:52 -0000 1.19
--- aaindex.rb 5 Apr 2007 23:35:40 -0000 1.20
***************
*** 6,10 ****
# Copyright:: Copyright (C) 2006
# Mitsuteru C. Nakao <n at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 6,10 ----
# Copyright:: Copyright (C) 2006
# Mitsuteru C. Nakao <n at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: soft.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/soft.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** soft.rb 2 Feb 2007 06:13:10 -0000 1.1
--- soft.rb 5 Apr 2007 23:35:40 -0000 1.2
***************
*** 4,8 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: Distributes under the same terms as Ruby
#
# $Id$
--- 4,8 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: The Ruby License
#
# $Id$
***************
*** 16,20 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: Distributes under the same terms as Ruby
#
#
--- 16,20 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: The Ruby License
#
#
Index: go.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/go.rb,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11
*** go.rb 30 Apr 2006 07:11:28 -0000 1.10
--- go.rb 5 Apr 2007 23:35:40 -0000 1.11
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2003
# Mitsuteru C. Nakao <n at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2003
# Mitsuteru C. Nakao <n at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: litdb.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/litdb.rb,v
retrieving revision 0.9
retrieving revision 0.10
diff -C2 -d -r0.9 -r0.10
*** litdb.rb 19 Sep 2006 06:03:51 -0000 0.9
--- litdb.rb 5 Apr 2007 23:35:40 -0000 0.10
***************
*** 3,7 ****
#
# Copyright:: Copyright (C) 2001 Toshiaki Katayama <k at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 3,7 ----
#
# Copyright:: Copyright (C) 2001 Toshiaki Katayama <k at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: fasta.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/fasta.rb,v
retrieving revision 1.27
retrieving revision 1.28
diff -C2 -d -r1.27 -r1.28
*** fasta.rb 31 Dec 2006 21:54:49 -0000 1.27
--- fasta.rb 5 Apr 2007 23:35:40 -0000 1.28
***************
*** 5,9 ****
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>,
# Toshiaki Katayama <k at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 5,9 ----
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>,
# Toshiaki Katayama <k at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: newick.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/newick.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** newick.rb 15 Dec 2006 14:59:25 -0000 1.6
--- newick.rb 5 Apr 2007 23:35:40 -0000 1.7
***************
*** 5,9 ****
# Naohisa Goto <ng at bioruby.org>
# Daniel Amelang <dan at amelang.net>
! # License:: Ruby's
#
# $Id$
--- 5,9 ----
# Naohisa Goto <ng at bioruby.org>
# Daniel Amelang <dan at amelang.net>
! # License:: The Ruby License
#
# $Id$
Index: pdb.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** pdb.rb 29 Mar 2007 12:50:49 -0000 1.7
--- pdb.rb 5 Apr 2007 23:35:40 -0000 1.8
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2004
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2004
# GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License:: The Ruby License
#
# $Id$
Index: rebase.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/rebase.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** rebase.rb 1 Jan 2007 00:12:54 -0000 1.7
--- rebase.rb 5 Apr 2007 23:35:40 -0000 1.8
***************
*** 4,8 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: Distributes under the same terms as Ruby
#
# $Id$
--- 4,8 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: The Ruby License
#
# $Id$
***************
*** 20,24 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: Distributes under the same terms as Ruby
#
#
--- 20,24 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License:: The Ruby License
#
#
Index: nexus.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/nexus.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** nexus.rb 19 Dec 2006 05:37:50 -0000 1.2
--- nexus.rb 5 Apr 2007 23:35:40 -0000 1.3
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2006 Christian M Zmasek <cmzmasek at yahoo.com>
#
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2006 Christian M Zmasek <cmzmasek at yahoo.com>
#
! # License:: The Ruby License
#
# $Id$
Index: medline.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/medline.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** medline.rb 19 Sep 2006 06:03:51 -0000 1.15
--- medline.rb 5 Apr 2007 23:35:40 -0000 1.16
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2001, 2005
# Toshiaki Katayama <k at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2001, 2005
# Toshiaki Katayama <k at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: lasergene.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/lasergene.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** lasergene.rb 1 Feb 2007 05:23:01 -0000 1.2
--- lasergene.rb 5 Apr 2007 23:35:40 -0000 1.3
***************
*** 4,8 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Center for Biomedical Research Informatics, University of Minnesota (http://cbri.umn.edu)
! # License:: Distributes under the same terms as Ruby
#
# $Id$
--- 4,8 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Center for Biomedical Research Informatics, University of Minnesota (http://cbri.umn.edu)
! # License:: The Ruby License
#
# $Id$
***************
*** 16,20 ****
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Center for Biomedical Research Informatics, University of Minnesota (http://cbri.umn.edu)
! # License:: Distributes under the same terms as Ruby
#
# = Description
--- 16,20 ----
# Author:: Trevor Wennblom <mailto:trevor at corevx.com>
# Copyright:: Copyright (c) 2007 Center for Biomedical Research Informatics, University of Minnesota (http://cbri.umn.edu)
! # License:: The Ruby License
#
# = Description
Index: gff.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/gff.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** gff.rb 8 May 2006 14:31:58 -0000 1.7
--- gff.rb 5 Apr 2007 23:35:40 -0000 1.8
***************
*** 5,9 ****
# Toshiaki Katayama <k at bioruby.org>
# 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License:: Ruby's
#
# $Id$
--- 5,9 ----
# Toshiaki Katayama <k at bioruby.org>
# 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License:: The Ruby License
#
# $Id$
Index: fantom.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/fantom.rb,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** fantom.rb 14 Jul 2006 14:48:55 -0000 1.13
--- fantom.rb 5 Apr 2007 23:35:40 -0000 1.14
***************
*** 3,7 ****
#
# Copyright:: Copyright (C) 2003 GOTO Naohisa <ng at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 3,7 ----
#
# Copyright:: Copyright (C) 2003 GOTO Naohisa <ng at bioruby.org>
! # License:: The Ruby License
#
# $Id$
Index: transfac.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/transfac.rb,v
retrieving revision 1.11
retrieving revision 1.12
diff -C2 -d -r1.11 -r1.12
*** transfac.rb 29 Mar 2007 12:46:58 -0000 1.11
--- transfac.rb 5 Apr 2007 23:35:40 -0000 1.12
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2001
# Shuichi Kawashima <shuichi at hgc.jp>
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2001
# Shuichi Kawashima <shuichi at hgc.jp>
! # License:: The Ruby License
#
# $Id$
Index: nbrf.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/nbrf.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** nbrf.rb 19 Sep 2006 06:03:51 -0000 1.9
--- nbrf.rb 5 Apr 2007 23:35:40 -0000 1.10
***************
*** 4,8 ****
# Copyright:: Copyright (C) 2001-2003,2006 Naohisa Goto <ng at bioruby.org>
# Copyright (C) 2001-2002 Toshiaki Katayama <k at bioruby.org>
! # License:: Ruby's
#
# $Id$
--- 4,8 ----
# Copyright:: Copyright (C) 2001-2003,2006 Naohisa Goto <ng at bioruby.org>
# Copyright (C) 2001-2002 Toshiaki Katayama <k at bioruby.org>
! # License:: The Ruby License
#
# $Id$
More information about the bioruby-cvs
mailing list