[BioRuby-cvs] bioruby/lib/bio/io das.rb, 1.15, 1.16 dbget.rb, 1.12, 1.13 ddbjxml.rb, 1.13, 1.14 ebisoap.rb, 1.2, 1.3 ensembl.rb, 1.10, 1.11 fastacmd.rb, 1.15, 1.16 fetch.rb, 1.9, 1.10 flatfile.rb, 1.57, 1.58 keggapi.rb, 1.13, 1.14 ncbisoap.rb, 1.2, 1.3 pubmed.rb, 1.15, 1.16 registry.rb, 1.18, 1.19 soapwsdl.rb, 1.6, 1.7 sql.rb, 1.7, 1.8

Trevor Wennblom trevor at dev.open-bio.org
Thu Apr 5 23:35:43 UTC 2007 

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/io

Modified Files:
	das.rb dbget.rb ddbjxml.rb ebisoap.rb ensembl.rb fastacmd.rb 
	fetch.rb flatfile.rb keggapi.rb ncbisoap.rb pubmed.rb 
	registry.rb soapwsdl.rb sql.rb 
Log Message:
Standardize on The Ruby License

Index: registry.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/registry.rb,v
retrieving revision 1.18
retrieving revision 1.19
diff -C2 -d -r1.18 -r1.19
*** registry.rb	14 Jul 2006 14:48:56 -0000	1.18
--- registry.rb	5 Apr 2007 23:35:41 -0000	1.19
***************
*** 4,8 ****
  # Copyright::   Copyright (C) 2002, 2003, 2004, 2005
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::   Copyright (C) 2002, 2003, 2004, 2005
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: dbget.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/dbget.rb,v
retrieving revision 1.12
retrieving revision 1.13
diff -C2 -d -r1.12 -r1.13
*** dbget.rb	8 May 2006 14:29:58 -0000	1.12
--- dbget.rb	5 Apr 2007 23:35:41 -0000	1.13
***************
*** 5,9 ****
  #		Mitsuteru C. Nakao <n at bioruby.org>,
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	Ruby's
  #
  # $Id$
--- 5,9 ----
  #		Mitsuteru C. Nakao <n at bioruby.org>,
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	The Ruby License
  #
  # $Id$

Index: pubmed.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/pubmed.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** pubmed.rb	19 Sep 2006 05:47:52 -0000	1.15
--- pubmed.rb	5 Apr 2007 23:35:41 -0000	1.16
***************
*** 4,8 ****
  # Copyright::  Copyright (C) 2001 Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::  Copyright (C) 2001 Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    The Ruby License
  #
  # $Id$

Index: keggapi.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/keggapi.rb,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** keggapi.rb	19 Sep 2006 05:45:48 -0000	1.13
--- keggapi.rb	5 Apr 2007 23:35:41 -0000	1.14
***************
*** 3,7 ****
  #
  # Copyright::  Copyright (C) 2003, 2004 Toshiaki Katayama <k at bioruby.org>
! # License::    Ruby's
  #
  # $Id$
--- 3,7 ----
  #
  # Copyright::  Copyright (C) 2003, 2004 Toshiaki Katayama <k at bioruby.org>
! # License::    The Ruby License
  #
  # $Id$

Index: ebisoap.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ebisoap.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** ebisoap.rb	28 Mar 2007 09:11:02 -0000	1.2
--- ebisoap.rb	5 Apr 2007 23:35:41 -0000	1.3
***************
*** 4,8 ****
  # Copyright::  Copyright (C) 2006
  #              Toshiaki Katayama <k at bioruby.org>
! # License::    Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::  Copyright (C) 2006
  #              Toshiaki Katayama <k at bioruby.org>
! # License::    The Ruby License
  #
  # $Id$

Index: sql.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/sql.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** sql.rb	15 Dec 2006 16:53:20 -0000	1.7
--- sql.rb	5 Apr 2007 23:35:41 -0000	1.8
***************
*** 4,8 ****
  # Copyright::  Copyright (C) 2002 Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006 Raoul Jean Pierre Bonnal <raoul.bonnal at itb.cnr.it>
! # License::    Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::  Copyright (C) 2002 Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006 Raoul Jean Pierre Bonnal <raoul.bonnal at itb.cnr.it>
! # License::    The Ruby License
  #
  # $Id$

Index: ddbjxml.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ddbjxml.rb,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** ddbjxml.rb	28 Mar 2007 09:11:02 -0000	1.13
--- ddbjxml.rb	5 Apr 2007 23:35:41 -0000	1.14
***************
*** 4,8 ****
  # Copyright::	Copyright (C) 2003, 2004
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::	Copyright (C) 2003, 2004
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	The Ruby License
  #
  # $Id$

Index: fetch.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/fetch.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** fetch.rb	14 Jul 2006 14:28:44 -0000	1.9
--- fetch.rb	5 Apr 2007 23:35:41 -0000	1.10
***************
*** 4,8 ****
  # Copyright::	Copyright (C) 2002, 2005 Toshiaki Katayama <k at bioruby.org>,
  #               Copyright (C) 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::     Ruby's
  #
  #  $Id$
--- 4,8 ----
  # Copyright::	Copyright (C) 2002, 2005 Toshiaki Katayama <k at bioruby.org>,
  #               Copyright (C) 2006 Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::     The Ruby License
  #
  #  $Id$

Index: ensembl.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ensembl.rb,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11
*** ensembl.rb	29 Mar 2007 14:14:17 -0000	1.10
--- ensembl.rb	5 Apr 2007 23:35:41 -0000	1.11
***************
*** 4,8 ****
  # Copyright::   Copyright (C) 2006
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::   Copyright (C) 2006
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: soapwsdl.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/soapwsdl.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** soapwsdl.rb	19 Sep 2006 05:43:06 -0000	1.6
--- soapwsdl.rb	5 Apr 2007 23:35:41 -0000	1.7
***************
*** 4,8 ****
  # Copyright::   Copyright (C) 2004 
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::   Copyright (C) 2004 
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.57
retrieving revision 1.58
diff -C2 -d -r1.57 -r1.58
*** flatfile.rb	27 Mar 2007 09:26:03 -0000	1.57
--- flatfile.rb	5 Apr 2007 23:35:41 -0000	1.58
***************
*** 4,8 ****
  #   Copyright (C) 2001-2006 Naohisa Goto <ng at bioruby.org>
  #
! # License:: Ruby's
  #
  #  $Id$
--- 4,8 ----
  #   Copyright (C) 2001-2006 Naohisa Goto <ng at bioruby.org>
  #
! # License:: The Ruby License
  #
  #  $Id$

Index: das.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/das.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** das.rb	28 Mar 2007 19:51:24 -0000	1.15
--- das.rb	5 Apr 2007 23:35:41 -0000	1.16
***************
*** 5,9 ****
  #		Shuichi Kawashima <shuichi at hgc.jp>,
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	Ruby's
  #
  # $Id$
--- 5,9 ----
  #		Shuichi Kawashima <shuichi at hgc.jp>,
  #		Toshiaki Katayama <k at bioruby.org>
! # License::	The Ruby License
  #
  # $Id$

Index: fastacmd.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/fastacmd.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** fastacmd.rb	29 Mar 2007 12:44:25 -0000	1.15
--- fastacmd.rb	5 Apr 2007 23:35:41 -0000	1.16
***************
*** 7,11 ****
  #              Mitsuteru C. Nakao <n at bioruby.org>,
  #              Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    Ruby's
  #
  # $Id$
--- 7,11 ----
  #              Mitsuteru C. Nakao <n at bioruby.org>,
  #              Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    The Ruby License
  #
  # $Id$

Index: ncbisoap.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ncbisoap.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** ncbisoap.rb	28 Mar 2007 09:11:02 -0000	1.2
--- ncbisoap.rb	5 Apr 2007 23:35:41 -0000	1.3
***************
*** 4,8 ****
  # Copyright::   Copyright (C) 2004, 2006
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::   Copyright (C) 2004, 2006
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

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