[BioRuby-cvs] bioruby/lib/bio/appl blast.rb, 1.32, 1.33 clustalw.rb, 1.17, 1.18 emboss.rb, 1.7, 1.8 fasta.rb, 1.23, 1.24 hmmer.rb, 1.8, 1.9 mafft.rb, 1.16, 1.17 psort.rb, 1.12, 1.13 pts1.rb, 1.4, 1.5 sim4.rb, 1.9, 1.10

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/appl
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/appl

Modified Files:
	blast.rb clustalw.rb emboss.rb fasta.rb hmmer.rb mafft.rb 
	psort.rb pts1.rb sim4.rb 
Log Message:
Standardize on The Ruby License

Index: emboss.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/emboss.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** emboss.rb	19 Sep 2006 06:31:08 -0000	1.7
--- emboss.rb	5 Apr 2007 23:35:39 -0000	1.8
***************
*** 4,8 ****
  # Copyright::  Copyright (C) 2002, 2005 Toshiaki Katayama<k at bioruby.org>
  # Copyright::  Copyright (C) 2006       Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::  Copyright (C) 2002, 2005 Toshiaki Katayama<k at bioruby.org>
  # Copyright::  Copyright (C) 2006       Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    The Ruby License
  #
  # $Id$

Index: pts1.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/pts1.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** pts1.rb	14 Jul 2006 14:28:44 -0000	1.4
--- pts1.rb	5 Apr 2007 23:35:39 -0000	1.5
***************
*** 7,11 ****
  # Copyright::   Copyright (C) 2006 
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 7,11 ----
  # Copyright::   Copyright (C) 2006 
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: psort.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/psort.rb,v
retrieving revision 1.12
retrieving revision 1.13
diff -C2 -d -r1.12 -r1.13
*** psort.rb	19 Sep 2006 06:30:42 -0000	1.12
--- psort.rb	5 Apr 2007 23:35:39 -0000	1.13
***************
*** 6,10 ****
  # Copyright::   Copyright (C) 2003-2006
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 6,10 ----
  # Copyright::   Copyright (C) 2003-2006
  #               Mitsuteru C. Nakao <n at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: fasta.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/fasta.rb,v
retrieving revision 1.23
retrieving revision 1.24
diff -C2 -d -r1.23 -r1.24
*** fasta.rb	19 Sep 2006 06:28:56 -0000	1.23
--- fasta.rb	5 Apr 2007 23:35:39 -0000	1.24
***************
*** 3,7 ****
  #
  # Copyright::  Copyright (C) 2001, 2002 Toshiaki Katayama <k at bioruby.org>
! # License::    Ruby's
  #
  # $Id$
--- 3,7 ----
  #
  # Copyright::  Copyright (C) 2001, 2002 Toshiaki Katayama <k at bioruby.org>
! # License::    The Ruby License
  #
  # $Id$

Index: sim4.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/sim4.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** sim4.rb	14 Dec 2006 15:59:21 -0000	1.9
--- sim4.rb	5 Apr 2007 23:35:39 -0000	1.10
***************
*** 3,7 ****
  #
  # Copyright:: Copyright (C) 2004 GOTO Naohisa <ng at bioruby.org>
! # License::   Ruby's
  #
  #  $Id$
--- 3,7 ----
  #
  # Copyright:: Copyright (C) 2004 GOTO Naohisa <ng at bioruby.org>
! # License::   The Ruby License
  #
  #  $Id$

Index: blast.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast.rb,v
retrieving revision 1.32
retrieving revision 1.33
diff -C2 -d -r1.32 -r1.33
*** blast.rb	19 Sep 2006 06:31:08 -0000	1.32
--- blast.rb	5 Apr 2007 23:35:39 -0000	1.33
***************
*** 5,9 ****
  # Copyright::  Copyright (C) 2002,2003  Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006       Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    Ruby's
  #
  # $Id$
--- 5,9 ----
  # Copyright::  Copyright (C) 2002,2003  Toshiaki Katayama <k at bioruby.org>
  # Copyright::  Copyright (C) 2006       Jan Aerts <jan.aerts at bbsrc.ac.uk>
! # License::    The Ruby License
  #
  # $Id$

Index: clustalw.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/clustalw.rb,v
retrieving revision 1.17
retrieving revision 1.18
diff -C2 -d -r1.17 -r1.18
*** clustalw.rb	14 Dec 2006 16:08:46 -0000	1.17
--- clustalw.rb	5 Apr 2007 23:35:39 -0000	1.18
***************
*** 3,7 ****
  #
  # Copyright:: Copyright (C) 2003 GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License::   Ruby's
  #
  #  $Id$
--- 3,7 ----
  #
  # Copyright:: Copyright (C) 2003 GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License::   The Ruby License
  #
  #  $Id$

Index: hmmer.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/hmmer.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** hmmer.rb	31 Dec 2006 21:54:49 -0000	1.8
--- hmmer.rb	5 Apr 2007 23:35:39 -0000	1.9
***************
*** 4,8 ****
  # Copyright::   Copyright (C) 2002 
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     Ruby's
  #
  # $Id$
--- 4,8 ----
  # Copyright::   Copyright (C) 2002 
  #               Toshiaki Katayama <k at bioruby.org>
! # License::     The Ruby License
  #
  # $Id$

Index: mafft.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/mafft.rb,v
retrieving revision 1.16
retrieving revision 1.17
diff -C2 -d -r1.16 -r1.17
*** mafft.rb	2 Apr 2007 12:55:26 -0000	1.16
--- mafft.rb	5 Apr 2007 23:35:39 -0000	1.17
***************
*** 3,7 ****
  #
  # Copyright:: Copyright (C) 2003 GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License::   Ruby's
  #
  #  $Id$
--- 3,7 ----
  #
  # Copyright:: Copyright (C) 2003 GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
! # License::   The Ruby License
  #
  #  $Id$