[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/range cut_range.rb, 1.2, 1.3 cut_ranges.rb, 1.3, 1.4 horizontal_cut_range.rb, 1.3, 1.4 sequence_range.rb, 1.6, 1.7 vertical_cut_range.rb, 1.3, 1.4

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/util/restriction_enzyme/range

Modified Files:
	cut_range.rb cut_ranges.rb horizontal_cut_range.rb 
	sequence_range.rb vertical_cut_range.rb 
Log Message:
Standardize on The Ruby License

Index: vertical_cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** vertical_cut_range.rb	4 Apr 2007 18:07:44 -0000	1.3
--- vertical_cut_range.rb	5 Apr 2007 23:35:42 -0000	1.4
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # FIXME docs are kind of out of date.  Change this to VerticalAndHorizontalCutRange
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # FIXME docs are kind of out of date.  Change this to VerticalAndHorizontalCutRange

Index: horizontal_cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** horizontal_cut_range.rb	4 Apr 2007 18:07:44 -0000	1.3
--- horizontal_cut_range.rb	5 Apr 2007 23:35:42 -0000	1.4
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  class HorizontalCutRange < CutRange
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  class HorizontalCutRange < CutRange

Index: sequence_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/sequence_range.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** sequence_range.rb	4 Apr 2007 18:07:44 -0000	1.6
--- sequence_range.rb	5 Apr 2007 23:35:42 -0000	1.7
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 25,29 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # A defined range over a nucleotide sequence.
--- 25,29 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # A defined range over a nucleotide sequence.

Index: cut_ranges.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/cut_ranges.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** cut_ranges.rb	4 Apr 2007 18:07:44 -0000	1.3
--- cut_ranges.rb	5 Apr 2007 23:35:42 -0000	1.4
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 18,22 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Container for many CutRange objects or CutRange child objects.  Inherits from array.
--- 18,22 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Container for many CutRange objects or CutRange child objects.  Inherits from array.

Index: cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/range/cut_range.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** cut_range.rb	4 Apr 2007 18:07:44 -0000	1.2
--- cut_range.rb	5 Apr 2007 23:35:42 -0000	1.3
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Abstract base class for HorizontalCutRange and VerticalCutRange
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Abstract base class for HorizontalCutRange and VerticalCutRange