[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis.rb, 1.15, 1.16 analysis_basic.rb, 1.9, 1.10 double_stranded.rb, 1.8, 1.9 single_strand.rb, 1.3, 1.4 single_strand_complement.rb, 1.2, 1.3 string_formatting.rb, 1.3, 1.4

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme
In directory dev.open-bio.org:/tmp/cvs-serv13464/lib/bio/util/restriction_enzyme

Modified Files:
	analysis.rb analysis_basic.rb double_stranded.rb 
	single_strand.rb single_strand_complement.rb 
	string_formatting.rb 
Log Message:
Removed independent path awareness.


Index: analysis_basic.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis_basic.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** analysis_basic.rb	28 Mar 2007 19:45:27 -0000	1.9
--- analysis_basic.rb	4 Apr 2007 18:07:43 -0000	1.10
***************
*** 9,16 ****
  #
  
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
- 
  require 'bio'
  class Bio::Sequence::NA
--- 9,12 ----

Index: string_formatting.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/string_formatting.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** string_formatting.rb	1 Jan 2007 03:36:37 -0000	1.3
--- string_formatting.rb	4 Apr 2007 18:07:43 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/cut_symbol'
--- 8,11 ----

Index: single_strand_complement.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/single_strand_complement.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** single_strand_complement.rb	31 Dec 2006 21:50:31 -0000	1.2
--- single_strand_complement.rb	4 Apr 2007 18:07:43 -0000	1.3
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/single_strand'
--- 8,11 ----

Index: double_stranded.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** double_stranded.rb	28 Mar 2007 19:45:27 -0000	1.8
--- double_stranded.rb	4 Apr 2007 18:07:43 -0000	1.9
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/db/rebase'
--- 8,11 ----

Index: single_strand.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/single_strand.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** single_strand.rb	1 Jan 2007 03:36:37 -0000	1.3
--- single_strand.rb	4 Apr 2007 18:07:43 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation'
--- 8,11 ----

Index: analysis.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** analysis.rb	5 Jan 2007 06:33:01 -0000	1.15
--- analysis.rb	4 Apr 2007 18:07:43 -0000	1.16
***************
*** 9,16 ****
  #
  
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
- 
  require 'bio/util/restriction_enzyme/analysis_basic'
  
--- 9,12 ----