[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/double_stranded aligned_strands.rb, 1.3, 1.4 cut_location_pair.rb, 1.5, 1.6 cut_location_pair_in_enzyme_notation.rb, 1.3, 1.4 cut_locations.rb, 1.3, 1.4 cut_locations_in_enzyme_notation.rb, 1.3, 1.4

[Trevor Wennblom]

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded
In directory dev.open-bio.org:/tmp/cvs-serv13464/lib/bio/util/restriction_enzyme/double_stranded

Modified Files:
	aligned_strands.rb cut_location_pair.rb 
	cut_location_pair_in_enzyme_notation.rb cut_locations.rb 
	cut_locations_in_enzyme_notation.rb 
Log Message:
Removed independent path awareness.


Index: aligned_strands.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** aligned_strands.rb	1 Jan 2007 05:07:04 -0000	1.3
--- aligned_strands.rb	4 Apr 2007 18:07:44 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/single_strand'
--- 8,11 ----

Index: cut_locations.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** cut_locations.rb	1 Jan 2007 05:07:04 -0000	1.3
--- cut_locations.rb	4 Apr 2007 18:07:44 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/double_stranded/cut_location_pair'
--- 8,11 ----

Index: cut_locations_in_enzyme_notation.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** cut_locations_in_enzyme_notation.rb	1 Jan 2007 05:07:04 -0000	1.3
--- cut_locations_in_enzyme_notation.rb	4 Apr 2007 18:07:44 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/double_stranded/cut_locations'
--- 8,11 ----

Index: cut_location_pair_in_enzyme_notation.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** cut_location_pair_in_enzyme_notation.rb	1 Jan 2007 05:07:04 -0000	1.3
--- cut_location_pair_in_enzyme_notation.rb	4 Apr 2007 18:07:44 -0000	1.4
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/double_stranded/cut_location_pair'
--- 8,11 ----

Index: cut_location_pair.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** cut_location_pair.rb	29 Mar 2007 02:48:15 -0000	1.5
--- cut_location_pair.rb	4 Apr 2007 18:07:44 -0000	1.6
***************
*** 8,14 ****
  #  $Id$
  #
- require 'pathname'
- libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
- $:.unshift(libpath) unless $:.include?(libpath)
  
  require 'bio/util/restriction_enzyme/cut_symbol'
--- 8,11 ----