[BioRuby-cvs] bioruby/lib/bio/appl/blast xmlparser.rb, 1.14, 1.15 wublast.rb, 1.7, 1.8 format0.rb, 1.18, 1.19

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/appl/blast
In directory dev.open-bio.org:/tmp/cvs-serv32759/lib/bio/appl/blast

Modified Files:
	xmlparser.rb wublast.rb format0.rb 
Log Message:
* minor doc fix


Index: xmlparser.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/xmlparser.rb,v
retrieving revision 1.14
retrieving revision 1.15
diff -C2 -d -r1.14 -r1.15
*** xmlparser.rb	30 Apr 2006 07:11:28 -0000	1.14
--- xmlparser.rb	19 Sep 2006 06:12:37 -0000	1.15
***************
*** 2,10 ****
  # = bio/appl/blast/xmlparser.rb - BLAST XML output (-m 7) parser by XMLParser
  # 
! # Copyright::    Copyright (C) 2001 
! #                Mitsuteru C. Nakao <n at bioruby.org>
! # Copyright::    Copyright (C) 2003 
! #                KATAYAMA Toshiaki <k at bioruby.org>
! # Lisence::      Ruby's
  #
  # $Id$
--- 2,10 ----
  # = bio/appl/blast/xmlparser.rb - BLAST XML output (-m 7) parser by XMLParser
  # 
! # Copyright::  Copyright (C) 2001 
! #              Mitsuteru C. Nakao <n at bioruby.org>
! # Copyright::  Copyright (C) 2003 
! #              Toshiaki Katayama <k at bioruby.org>
! # Lisence::    Ruby's
  #
  # $Id$
***************
*** 19,32 ****
  # (format 7) based on the XMLParser and the REXML.
  #
- # == Examples
- #
- # == References
- #
- # * Blast
- #   http://
- #
- # * XMLParser
- #   http://
- #
  
  begin
--- 19,22 ----

Index: wublast.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/wublast.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** wublast.rb	30 Apr 2006 05:47:25 -0000	1.7
--- wublast.rb	19 Sep 2006 06:12:37 -0000	1.8
***************
*** 2,18 ****
  # = bio/appl/blast/wublast.rb - WU-BLAST default output parser
  # 
! # Copyright:: Copyright (C) 2003 GOTO Naohisa <ng at bioruby.org>
! # License:: Ruby's
  #
! #  $Id$
  #
! #  WU-BLAST default output parser.
  #
! #  The parser is still incomplete and may contain many bugs,
! #  because I didn't have WU-BLAST license.
! #  It was tested under web-based WU-BLAST results and
! #  obsolete version downloaded from http://blast.wustl.edu/ .
  #
- # = References
  # * http://blast.wustl.edu/
  # * http://www.ebi.ac.uk/blast2/
--- 2,21 ----
  # = bio/appl/blast/wublast.rb - WU-BLAST default output parser
  # 
! # Copyright::  Copyright (C) 2003 GOTO Naohisa <ng at bioruby.org>
! # License::    Ruby's
  #
! # $Id$
  #
! # == Description
  #
! # WU-BLAST default output parser.
! #
! # The parser is still incomplete and may contain many bugs,
! # because I didn't have WU-BLAST license.
! # It was tested under web-based WU-BLAST results and
! # obsolete version downloaded from http://blast.wustl.edu/ .
! #
! # == References
  #
  # * http://blast.wustl.edu/
  # * http://www.ebi.ac.uk/blast2/

Index: format0.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/format0.rb,v
retrieving revision 1.18
retrieving revision 1.19
diff -C2 -d -r1.18 -r1.19
*** format0.rb	30 Apr 2006 05:47:59 -0000	1.18
--- format0.rb	19 Sep 2006 06:12:37 -0000	1.19
***************
*** 2,10 ****
  # = bio/appl/blast/format0.rb - BLAST default output (-m 0) parser
  # 
! # Author:: Naohisa GOTO
! # Copyright:: Copyright (C) 2003-2006 GOTO Naohisa <ng at bioruby.org>
! # License:: Ruby's
  #
! #  $Id$
  #
  # NCBI BLAST default (-m 0 option) output parser.
--- 2,11 ----
  # = bio/appl/blast/format0.rb - BLAST default output (-m 0) parser
  # 
! # Copyright::  Copyright (C) 2003-2006 GOTO Naohisa <ng at bioruby.org>
! # License::    Ruby's
  #
! # $Id$
! #
! # == Description
  #
  # NCBI BLAST default (-m 0 option) output parser.