[BioRuby-cvs] bioruby/test/data/fasta example1.txt, NONE, 1.1 example2.txt, NONE, 1.1

[Pjotr Prins]

Update of /home/repository/bioruby/bioruby/test/data/fasta
In directory pub.open-bio.org:/tmp/cvs-serv29781/test/data/fasta

Added Files:
	example1.txt example2.txt 
Log Message:
Added example of enzyme cuts using Trevor's libs - and two short
FASTA data files for testing



--- NEW FILE: example2.txt ---
>At1g11545.1 68414.m01326 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to endo-xyloglucan transferase GI:2244732 from [Gossypium hirsutum]
actcacggaacaagtgtagattgcattacctctctctctctctctcttcgaaatattcga
agtagagacaaccaATGGAGACGGAAAGGAGGATCATAACGAGCTGTTCTGCCATGACGG
CTCTGTTCTTGTTCATGACGGCTCTAATGGCGTCGTCCTCTATCGCAGCAACACCGACAC
AATCGTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCCGATG
ATGGAGAGATCTGGAATCTTTCCTTAGATAACGACACCGGATGTGGATTTCAGACAAAGC
ACATGTATAGATTCGGATGGTTTAGTATGAAGCTAAAGCTCGTCGGAGGCGACTCCGCCG
GCGTCGTCACCGCTTACTACATGTGTTCGGAGAATGGGGCAGGACCGGAGAGAGACGAGA
TAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAATGTGT
ATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACCAAGG
ATTATCACACCTACTCAATTCTTTGGAATAACCACCAGCTTGTGTTCTTCGTGGATAGGG
TACCAATTCGAGTATACAAGAACAGTGATAAGGTACCAAACAACGACTTCTTCCCGAACC
AGAAGCCGATGTACTTGTTCTCCAGCATTTGGAACGCTGACGATTGGGCTACACGTGGTG
GTCTGGAGAAGACTGACTGGAAAAAAGCTCCATTCGTCTCTTCTTACAAGGACTTCGCCG
TCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCTACCACAACAGAGAATT
GGTGGGATCAGTACGACGCGTGGCATTTGTCCAAGACACAGAAGATGGATTATGCGTGGG
TGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACTCTTC
CTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAaatcaattttgttttgagtgtattaaag
tggaaatggtttatgtaataattttactctcttttttttggcatttcttattttgttatg
gactatatcctctgtttatttatttaattaattatttatttagtcggctat


--- NEW FILE: example1.txt ---
>At1g02580 mRNA (2291 bp) UTR's and CDS
aggcgagtggttaatggagaaggaaaaccatgaggacgatggtgagggtttgccacccgaactaaatcagataaaa
gagcaaatcgaaaaggagagatttctgcatatcaagagaaaattcgagctgagatacattccaagtgtggctactc
atgcttcacaccatcaatcgtttgacttaaaccagcccgctgcagaggatgataatggaggagacaacaaatcact
tttgtcgagaatgcaaaacccacttcgtcatttcagtgcctcatctgattataattcttacgaagatcaaggttat
gttcttgatgaggatcaagattatgctcttgaagaagatgtaccattatttcttgatgaagatgtaccattattac
caagtgtcaagcttccaattgttgagaagctaccacgatccattacatgggtcttcaccaaaagtagccagctgat
ggctgaaagtgattctgtgattggtaagagacaaatctattatttgaatggtgaggcactagaattgagcagtgaa
gaagatgaggaagatgaagaagaagatgaggaagaaatcaagaaagaaaaatgcgaattttctgaagatgtagacc
gatttatatggacggttgggcaggactatggtttggatgatctggtcgtgcggcgtgctctcgccaagtacctcga
agtggatgtttcggacatattggaaagatacaatgaactcaagcttaagaatgatggaactgctggtgaggcttct
gatttgacatccaagacaataactactgctttccaggattttgctgatagacgtcattgccgtcgttgcatgatat
tcgattgtcatatgcatgagaagtatgagcccgagtctagatccagcgaagacaaatctagtttgtttgaggatga
agatagacaaccatgcagtgagcattgttacctcaaggtgaggagtgtgacagaagctgatcatgtgatggataat
gataactctatatcaaacaagattgtggtctcagatccaaacaacactatgtggacgcctgtagagaaggatcttt
acttgaaaggaattgagatatttgggagaaacagttgtgatgttgcattaaacatacttcgggggcttaagacgtg
cctagagatttacaattacatgcgcgaacaagatcaatgtactatgtcattagaccttaacaaaactacacaaaga
cacaatcaggttaccaaaaaagtatctcgaaaaagtagtaggtcggtccgcaaaaaatcgagactccgaaaatatg
ctcgttatccgcctgctttaaagaaaacaactagtggagaagctaagttttataagcactacacaccatgcacttg
caagtcaaaatgtggacagcaatgcccttgtttaactcacgaaaattgctgcgagaaatattgcgggtgctcaaag
gattgcaacaatcgctttggaggatgtaattgtgcaattggccaatgcacaaatcgacaatgtccttgttttgctg
ctaatcgtgaatgcgatcca  gatctttgtcggagttgtcctcttagctgtggagatggcactcttggtgagacacc
agtgcaaatccaatgcaagaacatgcaattcctccttcaaaccaataaaaagattctcattggaaagtctgatgtt
catggatggggtgcatttacatgggactctct  taaaaagaatgagtatctcggagaatatactggagaactgatca
ctcatgatgaagctaatgagcgtgggagaatagaagatcggattggttcttcctacctctttaccttgaatgatca
gctcgaaatcgatgctcgccgtaaaggaaacgagttcaaatttctcaatcactcagcaagacctaactgctacgcc
aagttgatgattgtgagaggagatcagaggattggtctatttgcggagagagcaatcgaagaaggtgaggagcttt
tcttcgactactgctatggaccagaacatgcggattggtcgcgtggtcgagaacctagaaagactggtgcttctaa
aaggtctaaggaagcccgtccagctcgttagtttttgatctgaggagaagcagcaattcaagcagtccttttttta
tgttatggtatatcaattaataatgtaatgctattttgtgttactaaaccaaaacttaagtttctgttttatttgt
tttagggtgttttgtttgtatcatatgtgtcttaactttcaaagttttctttttgtatttcaatttaaaaacaatg
tttatgttgtt

>At1g65300: mRNA 837bp
atgaagagaaagatgaagttatcgttaatagaaaacagtgtatcgaggaaaacaacattcaccaaaaggaagaaag
ggatgacgaagaaactaaccgagctagtcactctatgtggtgttgaagcatgtgcggtcgtctatagtccgttcaa
ctcgatcccggaggcttggccgtcaagggaaggcgttgaagacgtggtgtcgaaatttatggagttgtcggtgttg
gaccggaccaagaagatggtggatcaagagacttttataagtcaaaggatcgccaaagaaaaagagcagctgcaga
agctacgtgatgagaaccataattctcagattcgggagttaatgtttggttgtctcaaaggggagacgaatgtgta
taatcttgatggaagggatcttcaagatttgagtttatatattgataagtatcttaatggtcttactcgcaggatt
ga  gatcctTAttgagaacggtgagtcttcttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
tgatttttatgatcagattccaaagaaaattcatggttt  taatatgaatatgaataaggattcgaatcaaagtatg
gttttggatttgaatcaaaatcttaatgatggagaggacgagggcattccttgcatggacaacaacaactaccacc
ccgaaatcgattgtctcgctaccgtcaccactgcccccactgatgtttgtgctcctaacatcaccaatgatctcta
g

>At1g65300: mRNA 837bp (shortened at end)
atgaagagaaagatgaagttatcgttaatagaaaacagtgtatcgaggaaaacaacattcaccaaaaggaagaaag
ggatgacgaagaaactaaccgagctagtcactctatgtggtgttgaagcatgtgcggtcgtctatagtccgttcaa
ctcgatcccggaggcttggccgtcaagggaaggcgttgaagacgtggtgtcgaaatttatggagttgtcggtgttg
gaccggaccaagaagatggtggatcaagagacttttataagtcaaaggatcgccaaagaaaaagagcagctgcaga
agctacgtgatgagaaccataattctcagattcgggagttaatgtttggttgtctcaaaggggagacgaatgtgta
taatcttgatggaagggatcttcaagatttgagtttatatattgataagtatcttaatggtcttactcgcaggatt
gagatcctTAttgagaacggtgagtcttcttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
tgatttttatgatcag


>At1g65300: mRNA 837bp (shortened from start)
ttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
tgatttttatgatcagattccaaagaaaattcatggttttaatatgaatatgaataaggattcgaatcaaagtatg
gttttggatttgaatcaaaatcttaatgatggagaggacgagggcattccttgcatggacaacaacaactaccacc
ccgaaatcgattgtctcgctaccgtcaccactgcccccactgatgtttgtgctcctaacatcaccaatgatctcta
g


>At1g02580 - shortened for test - inserted cutpoint
gattgcaacaatcgctttggaggatgtaattgtgcaattggccaatgcacaaatcgacaatgtccttgttttgctg
ctaatcgtgaatgcgatcca  gatctttgtcggagttgtcctcttagctgtggagatggcactcttggtgagacacc
agtgcaaatccaatgcaagaacatgcaataataaaaagattctcattggaaagtctgatgttcatggattcatggt
tttaattggggtgcatttacatgggactctct  taaaaagaatgagtatctcggagaatatactggagaactgatca
ctcatgatgaagctaatgagcgtgggagaatagaagatcggattggttcttcctacctctttaccttgaatgatca