[BioRuby-cvs] bioruby/lib/bio/data aa.rb,0.17,0.18

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/data
In directory dev.open-bio.org:/tmp/cvs-serv27788/lib/bio/data

Modified Files:
	aa.rb 
Log Message:
* added J, O, and X amino acids


Index: aa.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/data/aa.rb,v
retrieving revision 0.17
retrieving revision 0.18
diff -C2 -d -r0.17 -r0.18
*** aa.rb	8 May 2006 14:19:51 -0000	0.17
--- aa.rb	25 Jul 2006 18:50:01 -0000	0.18
***************
*** 18,21 ****
--- 18,22 ----
      # * http://www.iupac.org/
      # * http://www.chem.qmw.ac.uk/iubmb/newsletter/1999/item3.html
+     # * http://www.ebi.ac.uk/RESID/faq.html
  
      NAMES = {
***************
*** 43,48 ****
        'B' => 'Asx',	# D/N
        'Z' => 'Glx',	# E/Q
        'U' => 'Sec',	# 'uga' (stop)
!       '?' => 'Pyl',	# 'uag' (stop)
       
        'Ala' => 'alanine',
--- 44,51 ----
        'B' => 'Asx',	# D/N
        'Z' => 'Glx',	# E/Q
+       'J' => 'Xle',	# I/L
        'U' => 'Sec',	# 'uga' (stop)
!       'O' => 'Pyl',	# 'uag' (stop)
!       'X' => 'Xaa',	# (unknown)
       
        'Ala' => 'alanine',
***************
*** 68,73 ****
--- 71,78 ----
        'Asx' => 'asparagine/aspartic acid',
        'Glx' => 'glutamine/glutamic acid',
+       'Xle' => 'isoleucine/leucine',
        'Sec' => 'selenocysteine',
        'Pyl' => 'pyrrolysine',
+       'Xaa' => 'unknown',
  
      }