[BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.42,1.43

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory pub.open-bio.org:/tmp/cvs-serv7939/io

Modified Files:
	flatfile.rb 
Log Message:
* In lib/bio/db/pdb/chemicalcomponent.rb, added a new class Bio::PDB::ChemicalComponent to parse the PDB Chemical Component Dictionary (PDB style format).
* Added file format autodetection for Bio::PDB::ChemicalComponent.
* Added flatfile indexer for Bio::PDB::ChemicalComponent.


Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.42
retrieving revision 1.43
diff -C2 -d -r1.42 -r1.43
*** flatfile.rb	28 Jan 2006 04:23:41 -0000	1.42
--- flatfile.rb	29 Jan 2006 06:54:14 -0000	1.43
***************
*** 443,446 ****
--- 443,449 ----
          Bio::PDB
  
+       when /^RESIDUE +.+ +\d+\s*$/
+         Bio::PDB::ChemicalComponent
+ 
        when /^CLUSTAL .*\(.*\).*sequence +alignment/
          Bio::ClustalW::Report