[BioRuby-cvs] bioruby/lib/bio/appl/spidey report.rb,1.3,1.4

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/appl/spidey
In directory pub.open-bio.org:/tmp/cvs-serv9931

Modified Files:
	report.rb 
Log Message:
lib/bio/appl/spidey/report.rb:
Bio::Spidey::Report::Hit#query_len, query_id, query_def, target_len, target_id, target_def did not work correctly.


Index: report.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/spidey/report.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** report.rb	8 Sep 2005 01:22:10 -0000	1.3
--- report.rb	11 Oct 2005 15:18:21 -0000	1.4
***************
*** 343,353 ****
  
          # Bio::BLAST::*::Report::Hit compatible methods
!         def query_len;  @mrna.len;        end
!         def query_id;   @mrna.entry_id;   end
!         def query_def;  @mrna.definition; end
  
!         def target_len; @genomic.len;        end
!         def target_id;  @genomic.entry_id;   end
!         def target_def; @genomic.definition; end
  
          alias hit_id     target_id
--- 343,353 ----
  
          # Bio::BLAST::*::Report::Hit compatible methods
!         def query_len;  mrna.len;        end
!         def query_id;   mrna.entry_id;   end
!         def query_def;  mrna.definition; end
  
!         def target_len; genomic.len;        end
!         def target_id;  genomic.entry_id;   end
!         def target_def; genomic.definition; end
  
          alias hit_id     target_id