[BioRuby-cvs] bioruby/lib/bio/io keggapi.rb,1.10,1.11

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory pub.open-bio.org:/tmp/cvs-serv30891/lib/bio/io

Modified Files:
	keggapi.rb 
Log Message:
* get_neighbors_by_gene method no more available on the server side
  since some while ago


Index: keggapi.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/keggapi.rb,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11
*** keggapi.rb	25 Nov 2005 11:28:30 -0000	1.10
--- keggapi.rb	18 Dec 2005 19:10:55 -0000	1.11
***************
*** 51,57 ****
    end
  
!   def get_all_neighbors_by_gene(genes_id, org)
!     get_all(:get_neighbors_by_gene, genes_id, org)
!   end
  
    def get_all_best_best_neighbors_by_gene(genes_id)
--- 51,57 ----
    end
  
! # def get_all_neighbors_by_gene(genes_id, org)
! #   get_all(:get_neighbors_by_gene, genes_id, org)
! # end
  
    def get_all_best_best_neighbors_by_gene(genes_id)
***************
*** 826,830 ****
  --- btit(string)
  --- get_linkdb_by_entry(entry_id, db, start, max_results)
! --- get_neighbors_by_gene(genes_id, org, start, max_results)
  --- get_best_best_neighbors_by_gene(genes_id, start, max_results)
  --- get_best_neighbors_by_gene(genes_id, start, max_results)
--- 826,830 ----
  --- btit(string)
  --- get_linkdb_by_entry(entry_id, db, start, max_results)
! #--- get_neighbors_by_gene(genes_id, org, start, max_results)
  --- get_best_best_neighbors_by_gene(genes_id, start, max_results)
  --- get_best_neighbors_by_gene(genes_id, start, max_results)