[BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,1.7,1.8

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/shell/plugin
In directory pub.open-bio.org:/tmp/cvs-serv28562/lib/bio/shell/plugin

Modified Files:
	keggapi.rb 
Log Message:
* added some notes


Index: keggapi.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/plugin/keggapi.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** keggapi.rb	30 Nov 2005 02:01:04 -0000	1.7
--- keggapi.rb	18 Dec 2005 15:47:33 -0000	1.8
***************
*** 119,122 ****
--- 119,142 ----
  
  =begin
+ 
+ == BioRuby extensions
+ 
+ --- get_all_best_best_neighbors_by_gene(genes_id)
+ --- get_all_best_neighbors_by_gene(genes_id)
+ --- get_all_reverse_best_neighbors_by_gene(genes_id)
+ --- get_all_paralogs_by_gene(genes_id)
+ --- get_all_genes_by_motifs(motif_id_list)
+ --- get_all_oc_members_by_gene(genes_id)
+ --- get_all_pc_members_by_gene(genes_id)
+ --- get_all_genes_by_organism(org)
+ --- get_all_linkdb_by_entry(entry_id, db)
+ --- save_image(url, filename = nil)
+ --- get_entries(ary = [])
+ --- get_aaseqs(ary = [])
+ --- get_naseqs(ary = [])
+ --- get_definitions(ary = [])
+ 
+ == Original KEGG API methods
+ 
  --- get_linkdb_by_entry(entry_id, db, start, max_results)
  --- get_best_best_neighbors_by_gene(genes_id, start, max_results)
***************
*** 164,166 ****
--- 184,187 ----
  --- get_number_of_genes_by_organism(org)
  --- convert_mol_to_kcf(mol_text)
+ 
  =end