[BioRuby-cvs] bioruby ChangeLog,1.35,1.36

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby
In directory pub.open-bio.org:/tmp/cvs-serv9033

Modified Files:
	ChangeLog 
Log Message:
	* lib/bio/command.rb
	
	  Newly added Bio::Command::Tools module.
  	  Bio::Command::Tools is a collection of useful methods
  	  for execution of external commands.

  	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb,
	  lib/bio/appl/hmmer.rb, lib/bio/io/fastacmd.rb

  	  For security reason, shell special characters are escaped.

  	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb, lib/bio/appl/hmmer.rb

	  Options are stored with an array (@options).
  	  #options and #opions= methods are added.
										  	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb

	  Bio::Blast.remote and Bio::Fasta.remote did not work
  	  due to the change of the GenomeNet.


Index: ChangeLog
===================================================================
RCS file: /home/repository/bioruby/bioruby/ChangeLog,v
retrieving revision 1.35
retrieving revision 1.36
diff -C2 -d -r1.35 -r1.36
*** ChangeLog	10 Aug 2005 17:23:41 -0000	1.35
--- ChangeLog	16 Aug 2005 09:38:34 -0000	1.36
***************
*** 1,2 ****
--- 1,25 ----
+ 2005-08-16  Naohisa Goto <ng at bioruby.org>
+ 
+ 	* lib/bio/command.rb
+ 
+ 	  Newly added Bio::Command::Tools module.
+ 	  Bio::Command::Tools is a collection of useful methods
+ 	  for execution of external commands.
+ 
+ 	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb,
+ 	  lib/bio/appl/hmmer.rb, lib/bio/io/fastacmd.rb
+ 
+ 	  For security reason, shell special characters are escaped.
+ 
+ 	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb, lib/bio/appl/hmmer.rb
+ 
+ 	  Options are stored with an array (@options).
+ 	  #options and #opions= methods are added.
+ 
+ 	* lib/bio/appl/blast.rb, lib/bio/appl/fasta.rb
+ 
+ 	  Bio::Blast.remote and Bio::Fasta.remote did not work
+ 	  due to the change of the GenomeNet.
+ 
  2005-08-11  Toshiaki Katayama <k at bioruby.org>