From samuel.ed.prince at gmail.com Wed Oct 23 16:50:10 2024 From: samuel.ed.prince at gmail.com (Samuel Prince) Date: Wed, 23 Oct 2024 16:50:10 -0400 Subject: [Biopython] Infernal output parser In-Reply-To: References: Message-ID: Hello Peter, Thank you for your feedback. I confirmed with the developer of Infernal, and both the tabular and plain text output format are stable. The code is ready. I will open a pull request on GitHub. Samuel On Tue, Sep 17, 2024 at 12:18?PM Peter Cock wrote: > Hello Samuel, > > Looking back over old emails, someone once suggested including an Infernal > parser as part of Bio.SearchIO - I've not used the tool but that sounds a > sensible home. I would probably focus on the tabular output as being > simpler and more robust to parse, but if the text output is stable that > could be OK. I am wary given the history of the BLAST text output which > changed lots over the years. > > Peter > > > On Mon, Sep 16, 2024 at 7:52?PM Samuel Prince > wrote: > >> Hello, >> >> I am writing a BioPython parser for Infernal (cmsearch and cmscan) >> standard text and tabular output. Would that be useful enough to be added >> to BioPython? Are there any specific aspects that I should know before >> contributing to this? >> >> >> Thank you, >> Samuel >> _______________________________________________ >> Biopython mailing list - Biopython at biopython.org >> https://mailman.open-bio.org/mailman/listinfo/biopython >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: