[Biopython] Mapper Module

[Daniel Gonzalez-Ibeas]

Hi,

Thank you. It works. I have updated the link in the wiki webpage.

I assume that the package is not available in the current release and we have to use the development version to try this package. Is correct?. Thank you.

Best regards,

Daniel.

August 30, 2022 at 12:42:02 PM CEST Peter Cock <p.j.a.cock at googlemail.com> wrote:
Does https://github.com/lennax/biopython/tree/f_loc5 work?

If so, could you update the example to point at that branch?

Peter

On Tue, Aug 30, 2022 at 11:19 AM Daniel Gonzalez-Ibeas <danielglz at mailfence.com> wrote:

Hi,

I am trying to use the Bio.SeqUtils.Mapper module documented on this Biopython web:

https://biopython.org/wiki/Coordinate_mapping

but I get an error: ModuleNotFoundError: No module named 'Bio.SeqUtils.Mapper'

It seems that the module does not exist. The github branch cited on the document does not exit neither:

https://github.com/lennax/biopython/tree/f_loc4

I think I am using the latest version of Biopython, v1.79.

I can not find this module in the documentation of this version. Is the module available?.
Is there any similar module for coordinate conversion?. Thank you.

Best regards,

Daniel.

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