[Biopython] Biopython 1.77 plans

[rob miller]

I'm expecting 2-3 more days before I can pass this back to João for review.
Cheers,
Rob.


On Thu, Jan 30, 2020 at 2:21 AM João Rodrigues <
j.p.g.l.m.rodrigues at gmail.com> wrote:

> Yes. I'd say go for the release and if they are ready or near-ready by
> then, we include them. Just wanted to mention them since it's been quite a
> lot of work on Rob's part to integrate his work in Biopython.
>
> Peter Cock <p.j.a.cock at googlemail.com> escreveu no dia quarta, 29/01/2020
> à(s) 15:08:
>
>> You mean these?
>>
>> https://github.com/biopython/biopython/pull/2399
>> https://github.com/biopython/biopython/pull/2400
>>
>> If they're ready soon, then sure.
>>
>> Peter
>>
>> On Wed, Jan 29, 2020 at 11:01 PM João Rodrigues <
>> j.p.g.l.m.rodrigues at gmail.com> wrote:
>>
>>> Hi Peter,
>>>
>>> If there's time, it would be nice to merge Rob Miller's internal
>>> coordinate code, but we can also leave it for the next release otherwise.
>>>
>>> Cheers,
>>>
>>> João
>>>
>>> Peter Cock <p.j.a.cock at googlemail.com> escreveu no dia quarta,
>>> 29/01/2020 à(s) 07:58:
>>>
>>>> Hello all,
>>>>
>>>> We have indeed done a *lot* of Python 2 cleanup over December and into
>>>> January 2020, and finished applying black to all of Biopython except the
>>>> tests.
>>>>
>>>> There is still some more of this maintenance work on going, but I think
>>>> my proposal aiming to release the Python 3 only Biopython 1.77 in early
>>>> February 2020 is still sensible.
>>>>
>>>> Again, are there any new things people are working on, or important bug
>>>> fixes we should wait for?
>>>>
>>>> Thank you,
>>>>
>>>> Peter
>>>>
>>>> On Tue, Jan 7, 2020 at 4:14 PM Peter Cock <p.j.a.cock at googlemail.com>
>>>> wrote:
>>>>
>>>>> Dear Biopytoneers,
>>>>>
>>>>> Biopython 1.76 released 20 December 2019 was our last release to
>>>>> support Python 2, although surprisingly the same day it was announced
>>>>> that Python 2.7 got a last minute support extension until April 2020:
>>>>>
>>>>> https://www.python.org/psf/press-release/pr20191220/
>>>>>
>>>>> Since then we've been busy removing legacy code and workarounds needed
>>>>> for Python 2 in Biopython, focussed on supporting Python 3.6 or later
>>>>> only. At the current rate, we'll have finished the bulk of that work
>>>>> later this month.
>>>>>
>>>>> Another milestone in sight is adoption of the black style for our
>>>>> source code (although the tests will take a while longer).
>>>>>
>>>>> https://github.com/psf/black
>>>>>
>>>>> While neither of these goals in themselves adds any new functionality,
>>>>> I think that would be a good point to release Biopython 1.77 - perhaps
>>>>> early February 2020?
>>>>>
>>>>> Are there any other new things people are working on, or important bug
>>>>> fixes we should wait for?
>>>>>
>>>>> Peter
>>>>>
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