[Biopython] Biopython 1.75 plans

Peter Cock p.j.a.cock at googlemail.com
Wed Nov 6 17:40:18 UTC 2019


Progress on the Python 3.8 wheels, they built  but sadly yes, we have a test
failure in SubsMat:

https://github.com/biopython/biopython/issues/2325

Might have to do another (point or patch) release to include Python 3.8
support, or just build the Python 3.8 wheels from a slightly later commit?

Peter

On Wed, Nov 6, 2019 at 4:07 PM Peter Cock <p.j.a.cock at googlemail.com> wrote:
>
> Wheels for Linux & macOS done for Python 2.7, 3.5, 3.6 and 3.7 but
> not yet 3.8 (I'm missing something in the build setup I think), but not
> both unicode width flavours of Python 2.7 (looks like a corner case
> in the new align code fails, will have to fix for the next release).
>
> Wheels for Windows are in hand - there can be a long wait for the
> AppVeyor system, and I've had to disable one of the new align code
> Tutorial doctests (likely a floating point difference or similar).
>
> And in typical timing, given this should be our first release to officially
> support Python 3.8, someone reported a new Python 3.8 regression:
> https://github.com/biopython/biopython/issues/2325
>
> Peter
>
> On Wed, Nov 6, 2019 at 2:03 PM Peter Cock <p.j.a.cock at googlemail.com> wrote:
> >
> > The release is in hand - no one has spoken up in support of keeping
> > the epydoc API documentation, and since it was so painful to get that
> > working this time (my default Python is Python 3 nowadays), I'll be
> > happy to see the end of it.
> >
> > http://biopython.org/DIST/docs/api/ <-- old, epydoc
> > https://biopython.org/docs/1.75/api/ <-- new, Sphinx
> >
> > Currently waiting for the wheels to build, fingers crossed that goes
> > smoothly.
> >
> > Peter


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