[Biopython] Deprecating BlastTextParser

Michiel de Hoon mjldehoon at yahoo.com
Wed Nov 21 02:27:44 UTC 2018


Dear all,
The blast_text module in Bio.SearchIO.BlastIO contains a parser for plain-text output from Blast.NCBI and Biopython itself recommend against parsing plain-text Blast output.
As far as I can tell, this module currently has no documentation and no tests.The module relies on the deprecated module Bio.Blast.NCBIStandalone, which relies on the deprecated module Bio.ParserSupport.
Can we deprecate Bio.SearchIO.BlastIO.blast_text ?
Best,-Michiel
 
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