[Biopython] two tracks on same level when using GenomeDiagram

[Peter Cock]

There's a simpler but circular example here:

https://github.com/peterjc/picobio/tree/master/assembly_comparison

Peter


On Mon, Jun 25, 2018 at 2:01 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Yes, you would do this with a single track consisting of the
> first contig, a spacer region, and then the second contig.
> A large white (non-transparent) box feature for the spacer
> might be enough for the draft figure, but as Leighton says,
> you may want to tweak this in a PDF editor to finish.
>
> There's an example of that here (look at the top track),
> but sadly I'm not sure right away where the code for that
> is...
>
> http://journals.plos.org/plosone/article/figure?id=10.1371/journal.pone.0040683.g002
>
> The Proux_et_al_2002_Figure_6.py example in the
> Tutorial is close, introduced originally here:
>
> https://news.open-bio.org/2012/03/02/cross-links-in-genomediagram/
>
> Peter
>
> On Mon, Jun 25, 2018 at 12:02 PM, Leighton Pritchard
> <Leighton.Pritchard at hutton.ac.uk> wrote:
>> Hi Adam,
>>
>>> On 25 Jun 2018, at 10:09, Adam Witney <awitney at sgul.ac.uk> wrote:
>>>
>>> No worries, thanks for your reply.
>>>
>>> Essentially what I have are two different contigs for one draft genome
>>> that I want to align to a single contig for another draft genome.
>>>
>>> Peter has also pasted this example:
>>>
>>> https://www.biostars.org/p/94400/
>>>
>>> are these likely being manually edited then?
>>
>> You know what, I don’t thnk they *are* being manually edited, so it may well
>> be possible in GenomeDiagram (and I just don’t know how to do it - how
>> embarrassing! ;) ).
>>
>> Checking the paper, I don’t see a link to the code, but maybe Peter could
>> put it up somewhere as an example for us both ;)
>>
>> Cheers,
>>
>> L.
>>
>> --
>> Dr Leighton Pritchard
>> Information and Computing Sciences Group; Weeds, Pests and Diseases Theme
>> DG31, James Hutton Institute (Dundee)
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>>
>>
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