[Biopython] Getting aligned residues index
Ahmad Abdelzaher
underoath006 at gmail.com
Tue Jun 5 17:11:09 UTC 2018
Hello,
I have the following code snippet:
from Bio import pairwise2
pacrg_fasta = 'DUDEWHEREISMYCAR'
model = 'MANWHEREISMYCAT'
alignments = pairwise2.align.globalxx(pacrg_fasta, model)
print(pairwise2.format_alignment(*alignments[0]))
The first matching letter is W. I want to be able to get the index of the
matching residues in a tuple, for example (4,3) for W, how can I do that
for all the matching residues?
Regards.
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