[Biopython] Biopython project under OBF for GSoC 2018

[Sourav Singh]

Hello,

The topic looks interesting to me. Are there any resources which touch upon
the subject of the project?

Regards,

Sourav

Sent from my Phone.Excuse any mistakes and brevity.

On Feb 28, 2018 3:26 PM, "Peter Cock" <p.j.a.cock at googlemail.com> wrote:

> On Tue, Feb 27, 2018 at 11:33 PM, Sourav Singh <ssouravsingh12 at gmail.com>
> wrote:
> > Hello,
> >
> > Thanks for the reply!
> >
> > For RNA Seq, Are we talking about adding modules for parsing of RNA
> > secondary structure and nucleotides? If so, The project looks
> interesting to
> > me. The only problem is I don't see the branch created by Kristian
> Rothner,
> > so the code may need to be written from scratch.
>
> No, although that's an interesting area in itself - and has been talked
> about before for GSoC.
>
> I meant RNA sequencing as a quantitative assay for gene expression,
> as an alternative to the older microarray technology used for gene
> expression analysis. This is a vast area and I don't immediately see
> a project idea here for Biopython.
>
> > I am also a bit worried about whether there would be anyone willing to
> > mentor a project for Biopython.
>
> Yes, sadly that is currently a bottleneck.
>
> Peter
>
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