[Biopython] Errors with retrieval from Entrez

Téletchéa Stéphane stephane.teletchea at univ-nantes.fr
Thu Nov 3 16:47:31 UTC 2016


Le 02/11/2016 à 09:57, David Martin (Staff) a écrit :
> handle= Entrez.efetch(db="nuccore", id=gi, retmode='text', rettype='gb')

Hi David,

Try to issue the command without storing it in the "handle".

If I issue the command using the same syntax, I get a warning that an 
email address should be provided (add email='you.email at domain.org' to 
your Entrez.efetch query).

Other than that:
- is your gi valid?
- any chance you are doing an http connection? the NCBI switched to 
https only by the 30th of september (which should be redirected 
automatically, but just to give you another direction...).

Best,

Stéphane

-- 
Assistant Professor in BioInformatics, UFIP, UMR 6286 CNRS, Team Protein 
Design In Silico
UFR Sciences et Techniques, 2, rue de la Houssinière, Bât. 25, 44322 
Nantes cedex 03, France
Tél : +33 251 125 636 / Fax : +33 251 125 632
http://www.ufip.univ-nantes.fr/ - http://www.steletch.org


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