[Biopython] Fst calculation

[Tommy Carstensen]

Thanks Tiago. PLINK1.9 should be able to do Fst calculations:
https://www.cog-genomics.org/plink2/basic_stats#fst

On Wed, Mar 11, 2015 at 5:10 PM, Tiago Antao <tra at popgen.net> wrote:
> Hi,
>
> You need to install Genepop.
> As far as I know, Plink does not compute Fst (but vcftools does). If
> you do it with VCFtools, be mindful of the filtering.
>
> On Tue, 10 Mar 2015 11:46:46 +0000
> Tommy Carstensen <tommy.carstensen at gmail.com> wrote:
>
>> Is it possible to calculate Fst with Biopython without installing the
>> Genepop module? I want to avoid too many module dependencies.
>> Otherwise I'll just do a vcftools or plink subprocess instead or write
>> the code myself. Thanks.
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